Schizosaccharomyces pombe (fission yeast): 2542180
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Entry
2542180 CDS
T00076
Symbol
SPOM_SPAC589.07C
Name
(RefSeq) WD repeat-containing protein Atg1801
KO
K17908
autophagy-related protein 18
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo04136
Autophagy - other
spo04138
Autophagy - yeast
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04138 Autophagy - yeast
2542180 (SPOM_SPAC589.07C)
04136 Autophagy - other
2542180 (SPOM_SPAC589.07C)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spo04131
]
2542180 (SPOM_SPAC589.07C)
03029 Mitochondrial biogenesis [BR:
spo03029
]
2542180 (SPOM_SPAC589.07C)
Membrane trafficking [BR:
spo04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
2542180 (SPOM_SPAC589.07C)
Mitochondrial biogenesis [BR:
spo03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
2542180 (SPOM_SPAC589.07C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
Beta-prop_EML_2
WD40
WDR55
WD40_Prp19
WD40_CDC20-Fz
ANAPC4_WD40
WD40_WDHD1_1st
Beta-prop_EML
BCAS3_WD40
Beta-prop_WDR90_POC16_2nd
Ge1_WD40
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_1st
VPS8_N
Beta-prop_HPS5
Beta-prop_RSE1_2nd
Beta-prop_NWD2_C
NBCH_WD40
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_IFT80_2nd
Motif
Other DBs
NCBI-GeneID:
2542180
NCBI-ProteinID:
NP_594055
PomBase:
SPAC589.07c
SPAC589.07c.1
UniProt:
Q9HDZ7
LinkDB
All DBs
Position
I:complement(join(3104343..3104364,3104433..3105153,3105219..3105378,3105441..3105547,3105613..3105686,3105871..3105908))
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AA seq
373 aa
AA seq
DB search
MHFFVRKYRGKAALLSIGTFDGYKIYNCDPFGKCFHKIQGATSIVEMLFSTSLVALVEKD
DGNNRKLKLINTKKSTTICELTFPTPLLAVKLNRKRLLAVLEEQIYVYDISNMLLLHTIE
TTSNVFAVCALSPNSENCYLAYPDSRDHEPRTEGESSSPNVSNSAVSGQVILWDVINCKQ
ITKIEAHKDSLACLAFNSDGTMLATASDNGRIIRVFAIPSGQRLYQFRRGSLPAQIYSIA
FHPDSSLLTVTSSTQTVHIFRLKEVYSNLERQGLLPSSPPPKESLLRRSSRSLIGTVGGY
LPQSVSGMLDPERDFAYAHIPGDKVTSIAAFGPDNTIVNVATYDGNLYSFRVNLRTGGEC
AMVNHFCVGLTAA
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgcatttctttgttcggaagtaccgcggcaaagcagctttgctctccattggaacattc
gatggatataagatatacaattgtgatccgtttggaaaatgttttcacaaaattcaaggt
gctacttcaatagtagagatgctgttcagtacatctctggtggctcttgtggagaaggac
gatggaaataatagaaagctgaagttaattaacacaaagaaaagcactacaatatgtgag
ttgacatttccgactcctttactagctgtcaagctgaatcgaaaacgcttgctggcggtt
ttggaggaacaaatttatgtatatgatataagcaatatgcttttgcttcacacaatcgaa
acaactagtaatgtgttcgctgtttgtgctctttcaccgaattccgaaaattgctatttg
gcgtatcctgatagtcgggatcatgagcctaggacggaaggtgagtcctccagtcctaat
gtatctaattctgctgtttctggtcaagtcattttgtgggatgtaatcaattgtaagcaa
ataaccaaaattgaagcccataaagattcacttgcctgtttggcatttaactctgacggc
acaatgcttgcaactgcttctgataatggtcgaattattcgagttttcgctataccttca
ggccagcgattatatcagtttcgtcgtggttctctccctgcccagatttattctattgct
tttcatcccgattctagtcttttgacggtaacatctagtacacaaaccgttcacattttc
cgtctcaaggaggtatattctaatttagagcgtcaaggtcttcttccttcttctccccct
cccaaagaaagcttacttcgtcgttcctcaagatcactcataggtactgttggtggatac
cttccgcagtcggtttctggaatgctcgacccagaaagagattttgcatacgctcatata
cctggtgataaggtcacctcaatcgctgctttcggtccagataatactattgtaaatgtt
gcaacttatgacggaaacctttattcttttcgtgttaatttgcgaacaggaggagaatgc
gctatggtaaatcatttttgtgtaggtcttactgctgcatga
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