Schizosaccharomyces pombe (fission yeast): 2542327
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Entry
2542327 CDS
T00076
Symbol
upf1, SPOM_SPAC16C9.06C
Name
(RefSeq) ATP-dependent RNA helicase Upf1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03013
Nucleocytoplasmic transport
spo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
2542327 (upf1)
03015 mRNA surveillance pathway
2542327 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2542327 (upf1)
Enzymes [BR:
spo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
2542327 (upf1)
5.6.2.5 RNA 5'-3' helicase
2542327 (upf1)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
2542327 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
2542327 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
SLFN-g3_helicase
Viral_helicase1
DEAD
NPHP3_N
DacZ_P
nSTAND3
PhoH
SNF2-rel_dom
NAT10_TcmA_helicase
AAA_25
UvrD_C_2
AAA_16
PIF1
AAA
AAA_22
SRP54
Motif
Other DBs
NCBI-GeneID:
2542327
NCBI-ProteinID:
NP_593080
PomBase:
SPAC16C9.06c
SPAC16C9.06c.1
UniProt:
Q09820
LinkDB
All DBs
Position
I:complement(801310..804087)
Genome browser
AA seq
925 aa
AA seq
DB search
MSLGLQPNNDISSLVSSKNMTSENGLEHQFEELLVEKQYSEEHCAYCHIKNPNSILKCLH
CNKWFCNVRGKSGASHIISHLVRARHKQVALHSHSSLSDTVLECYNCGTRNVFLLGFIPA
KAKTVVVLLCRQPCARASIAKDMNWDLTQWQPIISDRQFLPWLITPPSEEEQKLAIPITS
QQMVRLEELWRKDPNANLEDLDKPIEDDSLPSVELRYKDAHAYQAVLSPLIQAEADYDKR
LKESQTQKDVVVRWDQAINKRYTAWFLLPKLESGEIRLAIGDEMKLTYEGELRAPWSSTG
YVIKIPNNVSDEVGLELKRSDKVPIECTHNFSVDYVWKSTSFDRMQTALRLFATDGSRLS
SFLYHKLLGHDIPPSFLKPKLPSDLSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPGTGK
TVTSASVVYHLATMQSRKRKSHSPVLVCAPSNVAVDQLAEKIHRTGLRVVRVAAKSREDI
ESSVSFLSLHEQIKNYKFNPELQRLLKLRSENNELSIQDEKKLRILVAAAEKELLRAAHV
ICCTCVGAGDRRISKYKFRSVLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMN
KKVALASLSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIA
RHVDFPWIQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQIGI
VTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGF
VNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQKFSLT
LTPPQKPQKFKRDLNVQRSLSPIQNAGSAMLPSFSNLPNLYSSSYLEEWNVFAQYKRRES
NATDFEDFRSQVGDDESKFDEPTRF
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgtctttagggctacaacctaataatgatatttcatctttagttagttcaaaaaatatg
acttctgaaaatggactagagcatcaatttgaagaattattagtcgaaaaacaatattct
gaagaacactgtgcctattgccacataaagaatccaaattctatattgaaatgtttgcat
tgtaataaatggttttgtaatgtaagagggaaatctggagcttcgcatatcattagtcac
ctagttcgtgctcgacataagcaggttgctttacatagccattcttctctttcagacaca
gtacttgagtgttataattgtggaacgagaaatgtgtttctattaggatttataccagca
aaagctaagacagtggttgttttattatgccgacaaccttgtgctagagctagcatagct
aaggatatgaactgggacttgactcaatggcaacccattatttcagatcgtcagtttctt
ccatggttgataactcctccatccgaagaggaacaaaagcttgcaatcccaatcacttca
cagcaaatggttaggcttgaagaactttggcgtaaagaccctaatgctaacctcgaagac
ttggataagcccattgaggatgattcattaccttcagtagaacttcgatataaagatgct
cacgcgtatcaagcagttctttctccgctcattcaagcggaggctgactatgataaacga
ctcaaagaatcgcagactcaaaaagatgttgtggttcggtgggatcaagctatcaataaa
cgatatactgcttggtttctccttcccaaacttgaatctggtgaaattcggttggccata
ggagatgaaatgaagcttacatatgaaggagaactaagagcaccctggagctccacagga
tatgttattaaaattcctaacaacgtttcagatgaggtaggtttagaactgaagcgttca
gataaagtacctatcgaatgtactcataatttttccgtcgattatgtttggaaatctact
tcatttgatcgaatgcagactgctttgaggttatttgctacagacggatcacgtctttca
agctttttgtatcataaattgctaggacacgatatccctccttccttcctgaaaccaaaa
ttaccgtctgatttatcggtgcctaatctgccaaaattgaatgctagtcagagcgaagct
gttcgtgcagtattaagtaagccactctcgttaattcaagggccgccaggtactggaaaa
actgtcacctcagcatctgtagtctatcacctggccacgatgcaatcacgcaagcgtaaa
tcccattctcccgtattagtttgtgcaccttcgaatgttgctgttgaccaacttgctgaa
aaaatacatcgtacaggacttcgtgtcgttcgagttgccgcaaagtctagagaagacata
gaatcatcggtttcctttttatctcttcatgagcaaattaaaaactataagtttaatcca
gagttacaacgtttattgaagctacgaagtgaaaataacgaattatctattcaggatgaa
aaaaaactgcgtattttggttgctgctgccgaaaaagaactattacgtgcggctcatgtc
atttgttgtacttgtgttggtgctggtgatagaaggatttccaagtacaaatttcgttca
gtacttattgacgaagctacacaggcttcagaacctgaatgcatgattcctttagtttta
ggcgccaaacaagtagtacttgttggtgatcaccaacaactgggaccggttgttatgaat
aaaaaggttgcattagctagcctttcccaatcactttttgagcgactgattatattagga
aactctcctttcagattagttgtgcaatatcgtatgcatccctgtctttcagaatttcca
tcgaacactttttatgaaggtactcttcaaaatggtgtcactacttctgagcgtattgct
agacatgttgattttccatggatacaacctgattcgccattaatgttttatgcaaatttc
ggtcaggaagagctgtcggctagcggtacatcatttttaaacagaacggaagcctcaacg
tgtgaaaaaattgttaccacatttttaagaagcaacgtgcttcctgagcaaattggtatt
gttactccatatgatggtcagcgttcctatattgttcagtacatgcaaaataacggatca
atgcagaaggatctttataaagctgttgaagtagcatcggtggatgcgttccaaggaaga
gaaaaggacttcattattttgtcgtgtgtacgttctagtgaacaccaaggtattggtttt
gttaacgatccaagaaggttgaacgttgcattgactcgagcaaagtatggtgtaattgtt
ctcggtaatccaaaagtccttgctaaacatgctttatggtatcattttgtcctccattgc
aaggaaaaaggatatttagttgaaggcactttgaacagcttacaaaagttttccttaacc
cttactcctcctcagaaacctcaaaaatttaaaagagacctcaatgtacaaagatcacta
tctcctatacagaatgccggttctgccatgttaccttcgttttctaatcttccgaactta
tactcttcctcgtatcttgaagaatggaatgtctttgctcaatacaaacgaagagaaagc
aacgctaccgactttgaagactttagaagtcaggttggtgatgatgaaagcaagttcgac
gaacctactaggttctag
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