Schizosaccharomyces pombe (fission yeast): 2542457
Help
Entry
2542457 CDS
T00076
Symbol
trz1, SPOM_SPAC1D4.10
Name
(RefSeq) 3' tRNA-processing endonuclease tRNAse Z L2 Trz1
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spo03016
]
2542457 (trz1)
Enzymes [BR:
spo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
2542457 (trz1)
Transfer RNA biogenesis [BR:
spo03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
2542457 (trz1)
Prokaryotic type
2542457 (trz1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_4
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
2542457
NCBI-ProteinID:
NP_593023
PomBase:
SPAC1D4.10
SPAC1D4.10.1
UniProt:
Q10155
LinkDB
All DBs
Position
I:join(653774..654158,654196..656240)
Genome browser
AA seq
809 aa
AA seq
DB search
MSKTVNFRATKNFYLQFVSVSSRDTSCIPCIHLFFDSKRYVFGSVGEGCQRAILSQQLRL
SKIKDVFLMQGSSISSPDTYDSSSSSSTTSVSDMLQLDDRDKVIVSERNSMCSTVNYPTW
WDSCGGFPGFLLSLNDISEPGETGEASPFVLHGPSEVHQFLSSMRHFTYHTNVNLTVQGY
TSAEAPVFVDENICVTPVVVSLVKNSFKKRKHENINRGTNARPLKEDRANTSPHWYSHVS
NDTSFVVENAMYNTPAPLEPDKPELFISYIVQSHPTPGKFDAAKAKSLGITKGLDCGRLA
RGEPVTLENGKTVYPKEVIGPSIPGSSFFIIHCPNELVIDLVIENHKWTNAPKPVCVIHS
VTPEVYKNPRYQSWISSFPSEVSHLIASTEVNEVINYPRSAVAIATLNLLDSKVFPLGFN
CYEVKNVQKNNRIAFAKPKLRFAFGKKTGIDDSEVGVSIEELKDKILKEKPDYKSFVEEA
QKYVSDKPKAPSFAGSDIQICTLGTGSAMPSLYRNVSSTYVRIPVDKKCMEDSAISMKNI
LLDCGEGTLGRLSRQYGDNLKYEIASLRWIYISHMHADHHAGVIGVLKAWTKYSDGRSKL
FITAPPQFEFWLLEYSRIDYLPLSNIVFISNSALRTDRKPSALESSRLSSLFKEFDLVSF
RTVPAIHCPYSYCMEITNSSGWKIAYSGDTRPSEDFANIAKDSTLLIHEATLEDSMHEIA
IKKQHSTYSEALEVAKKAGTKNVILTHFSQRYPKLPDIDISTEDLHIALAFDGMTLKISD
ISLFRYFGKPLAYLFNEENLKEESDPLKF
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaactgttaattttagggcaacaaaaaatttctatttacaatttgtgagcgtc
agttctcgggatacatcttgtattccctgcatccacttattttttgattctaagaggtat
gtatttggaagcgtaggggaaggttgtcaaagagctatactctcccaacagcttcgatta
tcaaagattaaagatgtcttcttaatgcaaggatcttcaatatcatcaccagatacatat
gattcttcttcttcatcgtctactacctctgtttctgatatgctacagctggatgatcgg
gacaaagttattgtatctgaacgtaatagtatgtgctcgactgtaaactatcctacatgg
tgggattcttgtggtgggtttccaggctttttgctgtctctcaatgatatttcggaacct
ggggaaaccggagaagctagtccttttgtccttcatggacctagtgaagttcatcagttt
ttatcttcgatgcggcatttcacttatcatacgaatgtaaatttaacggtacagggatat
acttcggctgaggccccagtattcgttgatgaaaatatttgtgtaactccggtagttgtt
tcactagttaaaaattcttttaaaaaaaggaagcatgaaaacattaacagaggtacaaat
gcaagaccattaaaagaggatagagcaaatacttctcctcattggtattctcacgtttcc
aatgatacatcattcgtcgttgagaatgcaatgtataacactccggctcctttggaacca
gacaagccagagctgtttatttcttatattgttcaatcccatcctaccccagggaaattt
gacgccgcaaaagcaaaatcgcttggtatcacgaaaggattagactgtggtagactcgct
cgaggagaacctgtaactcttgaaaacggaaaaacagtatatccaaaagaagtgattggt
ccttctattcctggctcctccttttttattattcattgccccaacgaactcgtaattgac
ttggtcattgaaaatcataaatggacaaatgcacctaaacctgtttgtgtcattcattcg
gttacaccagaagtatacaaaaatccacgttatcagagctggatttcttcattcccaagt
gaggtgagccatctaattgcttcgactgaagtaaacgaagtaataaattatcctaggagt
gcagtcgctattgcaacacttaatttgttagattcaaaagtttttcctttaggctttaac
tgctatgaagttaaaaatgtacaaaaaaacaatcgaattgcttttgccaaacccaaactg
cgttttgcgtttggaaaaaaaactggtattgacgattcggaagttggggtttcgattgaa
gagttgaaggataaaattttgaaagagaaaccagattataaatcatttgttgaagaagct
caaaaatatgttagtgataaaccaaaggcaccgagctttgcaggttctgacatccaaatt
tgtactcttggcactggatctgcaatgccttctttatacagaaatgtttcatctacttac
gttagaattcccgttgacaaaaaatgtatggaagactcagctatcagtatgaaaaacata
cttttggactgtggagagggcactttgggacgtctatcgaggcagtatggtgacaattta
aaatacgaaatagcttctttacgatggatttatatctcccatatgcatgctgaccatcat
gctggtgttataggggttttaaaggcttggacgaagtactcagatggcagatcaaagttg
tttataacagcacctccacaatttgaattttggctactagaatactcaaggattgattat
ctaccattatccaacatcgtatttatttccaatagtgctttacgtactgacaggaagccg
tctgctttggaatcctctaggttgtcttctttatttaaagaatttgatttagtatctttt
cgaacggttcctgccatacactgcccgtattcatattgcatggagattactaattccagt
ggttggaagatcgcatactctggagatactcgaccttctgaggattttgctaacattgcc
aaagactcaactttattaattcacgaagctactttggaagactctatgcacgaaattgca
ataaaaaagcaacacagtacttactctgaagctttagaagtggccaaaaaagctggtaca
aaaaacgttattttgactcattttagccaacgatatcccaaattaccagacattgatatt
tcgacagaagacttacatatagctttggcgtttgatggaatgactcttaaaatatcggat
atctcattgtttcgttattttggaaagcctctggcttatctatttaatgaggaaaattta
aaagaggagtcggatcctttaaagttctaa
DBGET
integrated database retrieval system
