KEGG   Schizosaccharomyces pombe (fission yeast): 2542480
Entry
2542480           CDS       T00076                                 
Symbol
smd2, SPOM_SPAC2C4.03C
Name
(RefSeq) Sm snRNP core protein Smd2
  KO
K11096  small nuclear ribonucleoprotein D2
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    2542480 (smd2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:spo03041]
    2542480 (smd2)
   03032 DNA replication proteins [BR:spo03032]
    2542480 (smd2)
Spliceosome [BR:spo03041]
 Complex A
  U1 snRNP components
   Sm proteins
    2542480 (smd2)
  U2 snRNP components
    2542480 (smd2)
 Complex B
  U1 snRNP components
    2542480 (smd2)
  U4/U6.U5 tri-snRNP components
    2542480 (smd2)
 Complex C
  U2 snRNP components
    2542480 (smd2)
DNA replication proteins [BR:spo03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     2542480 (smd2)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 2542480
NCBI-ProteinID: NP_594506
PomBase: SPAC2C4.03c SPAC2C4.03c.1
UniProt: O14036
Structure
LinkDB
Position
I:complement(join(4264024..4264152,4264214..4264326,4264387..4264487,4264545..4264549))
AA seq 115 aa
MADLVDKPRSELSEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAF
DRHSNMVLENVKEMWTEKKRTASGKKGKAINKDRFISKMFLRGDGVVLVVRIPSA
NT seq 348 nt   +upstreamnt  +downstreamnt
atggccgatttggttgataaacctagaagtgaactgagcgaaatagaactcgctcgtcta
gaagaatatgaattctctgctggtccattaagtgttttacaacaagcggtaaaaaatcat
gatcaagttcttattaattgtcgaaacaataaaaagttgcttgctagagtaaaggcattt
gatcgccattccaacatggtattagaaaatgtcaaagagatgtggaccgaaaaaaaacga
acagcttctggcaaaaaaggaaaggctatcaacaaagatagatttattagcaaaatgttt
cttcgtggtgatggtgtcgttcttgttgtccgtattccctctgcataa

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