Schizosaccharomyces pombe (fission yeast): 2542630
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Entry
2542630 CDS
T00076
Symbol
rcm1, SPOM_SPAC2C4.06C
Name
(RefSeq) rRNA methyltransferase
KO
K15264
25S rRNA (cytosine2278-C5)-methyltransferase [EC:
2.1.1.311
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spo03009
]
2542630 (rcm1)
Enzymes [BR:
spo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.311 25S rRNA (cytosine2278-C5)-methyltransferase
2542630 (rcm1)
Ribosome biogenesis [BR:
spo03009
]
Eukaryotic type
Other ribosome biogenesis factors
2542630 (rcm1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NSUN5_N
Methyltr_RsmB-F
NSUN5_fdxn-like
RsmF-B_ferredox
Methyltransf_31
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
2542630
NCBI-ProteinID:
NP_594509
PomBase:
SPAC2C4.06c
SPAC2C4.06c.1
UniProt:
O14039
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All DBs
Position
I:complement(join(4269367..4270554,4270616..4270674,4270736..4270871))
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AA seq
460 aa
AA seq
DB search
MDFYNHAANILSDLSKKKGSIKQLAFNSKKHDPKRTYALVCETLKYKPVLDEIIARSELL
VLEKKLKENLARVLVHDLLMSKRGLSISNGPIKECILRHKTRLNAEFVKLKVKKGVKSHE
ELALKNPVSLPRWLRINTIKSTKDEVLQGLGLDKVSSIEELGPDKFYIDDCVENLIAIDP
SFPIVENSLYKEGKVIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPGNKTTHLAACFPKS
HIFAFERDAKRVQTLRKMVGISGANNVTIEHQDFTLTDPKSDLYRNVTHILLDPSCSGSG
IVSRQDYLLGNEQDVTEDTERLENLCSFQSTILKHALQFPNCRHVTYSTCSVHRLENEQV
VCEVLSQEPDWKCNSLTKTLPNWKTRGIPEYCAQPSMAEGMIRCKPGAGGTIGFFVANLY
HPQREQETFKMYKNDDDTKKRKRKKKKKEVKKKARIQGEE
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggatttttataatcatgctgccaacatactttcagatttaagtaaaaaaaaaggatca
attaagcaattagcatttaattcaaaaaaacatgatccaaaacgcacttatgctttggtt
tgcgaaactctcaaatataaacctgttttggatgaaataattgcgcgatccgagttatta
gttttagagaaaaagttaaaagaaaatttggctagagtccttgtccatgatttactgatg
tcaaagcgagggttatccatttcaaatggtcctatcaaggaatgcattcttcgtcacaag
acacgcctgaacgccgagtttgtcaaactcaaggtgaaaaaaggggttaagagccatgag
gagctggcattgaaaaatcctgtgtcgctccctcgctggcttcgaataaataccattaaa
agcacaaaagacgaggttttgcaaggtttaggcttggataaagtcagttcaattgaggaa
ctgggccccgacaaattttatattgatgattgtgttgaaaacttaatagccatcgatcca
tcatttcctatagttgaaaattcattgtacaaggaggggaaagtgattattcaggacaag
gcatcttgttttcctgctgctgtattggccgggctaactggtcacgttggtgatataata
gatggatgtgctgctccagggaacaaaactactcatttagctgcttgttttccaaaatct
catatatttgcatttgaacgtgacgcgaaaagagtgcagacacttcgaaaaatggtggga
atatcaggcgctaataatgtcaccatcgaacatcaagattttaccctaactgatcccaag
agtgatctttaccgaaatgtcactcatatcctgcttgatccttcttgttctggttctgga
attgtgagtcgtcaagactatctgctgggtaatgaacaagacgttacggaagataccgaa
agacttgaaaatttgtgtagttttcagtctaccattttaaagcatgctttacaatttcct
aactgccgccatgtcacatattctacatgttcagtgcaccgtttagaaaacgaacaagta
gtatgtgaggttttgtcgcaagaacctgactggaaatgtaactctttgacaaaaactcta
cccaactggaaaactcgaggaattccagagtattgtgctcaaccttcaatggctgaagga
atgattcggtgtaaaccaggagccggaggtactattggtttttttgtagccaatttgtat
caccctcaaagagagcaagaaactttcaaaatgtataaaaatgatgatgataccaaaaag
cgtaagcgcaaaaagaaaaagaaggaagtgaagaaaaaggctcgcatacaaggtgaagag
taa
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