Schizosaccharomyces pombe (fission yeast): 2542744
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Entry
2542744 CDS
T00076
Symbol
cdc48, SPOM_SPAC1565.08
Name
(RefSeq) AAA family ATPase involved in ubiquitin-mediated protein degradation Cdc48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
2542744 (cdc48)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2542744 (cdc48)
03009 Ribosome biogenesis [BR:
spo03009
]
2542744 (cdc48)
04131 Membrane trafficking [BR:
spo04131
]
2542744 (cdc48)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spo04147
]
2542744 (cdc48)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
2542744 (cdc48)
Ribosome biogenesis [BR:
spo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
2542744 (cdc48)
Membrane trafficking [BR:
spo04131
]
SNARE
SNARE associated proteins
Others
2542744 (cdc48)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
2542744 (cdc48)
Exosome [BR:
spo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
2542744 (cdc48)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_33
AAA_2
AAA_16
AAA_5
TIP49
AAA_22
CDC48_2
AAA_14
RNA_helicase
Mg_chelatase
AAA_28
nSTAND3
Parvo_NS1
AAA_7
IstB_IS21
AAA_18
AAA_17
NPHP3_N
DUF815
ResIII
ABC_tran
ATPase
AAA_24
PhoH
TsaE
ATP-synt_ab
Vps4_C
KAP_NTPase
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
2542744
NCBI-ProteinID:
NP_593287
PomBase:
SPAC1565.08
SPAC1565.08.1
UniProt:
Q9P3A7
A0AAN2HE97
LinkDB
All DBs
Position
I:join(1306457..1306512,1306569..1308942)
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AA seq
809 aa
AA seq
DB search
MTDKKPEVEHLQGENPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTM
ETLQLFRGDTVVVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCP
DIKYAERISVLPLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVV
DVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRH
PQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNL
RKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAA
TNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGY
VGSDLASLCSEAAMQQIREKMDMIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSALRE
TVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTL
LAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKAR
GASAGDSGGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPL
PDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRAVKLAIKDSIEEDI
KRENETGEAPADDVVMDEDASVSQVQRHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSR
GLTGFQFDSADSNTNGPSFGNDGADDLYA
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataagaaaccagaagtggaacaccttcagggtgaaaaccctccaaaagataca
tatagtgcagaagacacagcaacagctattcttcgtaaaaaaagaaaaccaaattctcta
gtggtcgatgacgctaccaacgatgataactcagtaatcacattgtcgtccaataccatg
gagactttacaacttttccgtggtgacacagttgtcgttaaaggaaagagacggaaagac
actgtcttgattgttttaactgacgaagaaatggaagatggcgtagcaagaattaatcgt
gttgttcgtaacaacttgcgcgtaaggttaggcgatattgtaacgatcaatccttgtcca
gatattaaatatgctgaacgaatttcagtactacccttggctgataccgtcgagggtctt
actggttctctctttgatgtttaccttaagccgtactttgttgaagcgtatcgtcctatt
cgaaagggcgatcttttcgttgtacggggtagtatgcgtcaagttgaatttaaagttgtt
gatgttgctcctgatgaatttggcattgttagccaggatacaattattcattgggaaggt
gaacccattaatcgtgaggatgaagaaagtagcttggcagaagttggctatgacgatatc
ggtggttgtcgtcgccagatggctcaaatccgtgagcttgtcgagcttcccctccgtcat
ccccaattattcaaaagtataggtatcaagccacctcgtggtatccttatgtatggtcct
ccaggtaccggtaaaactttaatggctcgcgcagttgctaatgaaacgggcgctttcttt
ttcctgattaatggtcctgagattatgtcaaaaatggcaggcgaatctgagtctaatttg
cggaaggcgtttgaagaagccgaaaaaaattcccctgctattatttttattgatgagata
gattctattgctcccaagcgtgaaaaaacgaatggtgaagttgaacgacgtgttgtttca
caattattgactttaatggatggtatgaaagctcgtagtaatgttgtagtaatggccgct
accaatcgtcctaactctatcgatccggcattgagacgttttggtcgttttgatcgtgaa
gtcgatgttggtattcctgatcccaccggccgcttagagatccttcgtattcacacaaag
aacatgaagcttgctgatgacgttgatcttgagcaaattgctgctgagactcatggttac
gttggatctgatttggcatctttgtgttctgaagctgccatgcaacagattcgtgaaaag
atggatatgattgacttggatgaagatgagattgatgccgaggttttagactctctaggt
gttacaatggataacttcagatttgcccttggttccagcaatccttctgctttgcgtgaa
accgttgtggaagttcccaatgttcgttgggaagacattggtggattggaagaagttaag
cgtgaattacgtgaaactgtccagatgcctgttatgtatgccgaaaagtttttgcgtttt
ggtgtcactcccagcaaaggtgttttgtttttcggaccccctggtacaggtaagacattg
ttggcgaaagccattgccaacgaatgttctgccaactttatttcagtaaagggacccgaa
ttgcttagcatgtggtttggtgagtctgaatcaaacgttcgtgatatatttgacaaggct
cgtgctgcagctccttgtgtcgttttcttagatgagttggattctattgccaaagcacgt
ggcgcttctgctggtgactctggtggtggtgatcgtgttgtcaaccaacttcttactgag
atggatggtgttaacagcaagaagaatgtatttgttattggtgctaccaaccgtcccgat
cagattgatcctgccttgatgcgtcccggtcgtttggatcaattaatctacgttccctta
cccgatgaagaagctcgcttcagcattttgcaaactcaattgagacatacgcctgttgct
gaagatgttgacttgcgtgcagttgctaaggcgacccatggcttctcaggtgctgatttg
gagtttgttgtacaaagagctgttaaattggccatcaaggacagcattgaagaagacatc
aagcgcgaaaatgagactggagaggctcctgctgacgatgttgttatggacgaagatgca
tctgtgtctcaagttcagcgtcatcatgtggaggaggccatgaaaatggcacgccgctct
gtcagtgatgcagaagtccgtcgttatgaagcttatgcccatcaactccttacctcgcgt
ggtcttacaggattccagtttgattcggctgatagtaatactaatggaccaagcttcgga
aatgatggtgctgatgatttgtatgcatag
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