Schizosaccharomyces pombe (fission yeast): 2542874
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Entry
2542874 CDS
T00076
Symbol
gih35, SPOM_SPAC20H4.09
Name
(RefSeq) ATP-dependent RNA helicase
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spo03041
]
2542874 (gih35)
Enzymes [BR:
spo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
2542874 (gih35)
Spliceosome [BR:
spo03041
]
Complex C
Other components
Complex C specific factors
2542874 (gih35)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
ABC_tran
AAA_19
ATPase
PhoH
Motif
Other DBs
NCBI-GeneID:
2542874
NCBI-ProteinID:
NP_593629
PomBase:
SPAC20H4.09
SPAC20H4.09.1
UniProt:
Q9HE06
Structure
PDB
PDBj
LinkDB
All DBs
Position
I:join(2126067..2126157,2126201..2126278,2126327..2126391,2126440..2126696,2126733..2127504,2127551..2127652,2127701..2127869,2127912..2128232,2128271..2128359)
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AA seq
647 aa
AA seq
DB search
MPNEFISQSLSTLTNTPLNIQKKLLPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQ
FLYEAGWASQNGIIGCTQPRRLVAKSVSERVSLELNSPPGSLCGYSIQFDHNVSEKTKIK
YMTDGILLNEIFFDPLLERYSIVILDEVHERTLSTDLLLGVLKRILEKRNDFRLVLSSAS
VDANKLSQFFGQDKVCTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDIL
VFLSGRKEIEYCIKKIEDSLIHASEDCQTLVPLPLHAGLTVDEQMRVFNIYDGDFRKVIF
STNIAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKLINVPISKSSAIQRSGRAGRTMRG
KVFRLYTEKAYSLMKEEFEADILNCDMSPLVLFLKGLGLKNILQFPFFVRPPTVHLMAAL
EDLYLLGVLDESGNLTDPLGIQISNSFLDANISKALLTSNQFGCTHEILSIASILTAGEV
FYNPTSSSKNDAFVAHSSFFANEGDIITALNVFESFVGNKKDLQWCRKNYLNYQTLRQAL
DIRTHLVRFLNKFSIPTAQRLPSSDCSKILKCLLDGFVRNVAHLQNDGSYKTIGGKQVWL
DSSSVLHEKKTPWIMYSSAVESETQIFVKNISKIESFWLDKYYKREK
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgcctaatgagtttatttcccaatcgcttagtactcttacaaatacacccttaaatatt
cagaaaaagctattaccaatcaccaaatacagaaaccagttgttatatgcagtagagcaa
aatcagattactatagtgttaggccacacaggatgtggtaaaacaactcaaatccctcaa
tttttatacgaagctggatgggcgtcccaaaacggtattataggatgtacacagcccaga
agactcgtagcaaagagcgtctctgaacgagtatctttggaactgaactctcctcctgga
agtttgtgtggatatagcattcaatttgatcataacgtttctgaaaaaacaaaaataaaa
tatatgaccgatggaatccttttgaatgaaatattttttgatcctttgctggaaagatat
tcaatagtcattctcgacgaagtccatgaacgaactttgtcgacagatctcctactagga
gttttgaaaaggattttagaaaagaggaatgattttagacttgtgctctccagcgcttct
gttgacgcgaataaactgtctcagtttttcggacaagataaagtatgcactatgtcaatt
gaagggaaattattccccgtagaaacattatttttgcagaaacctacagaaaattacgtt
gattctgcaatcgaaacggttataaacattaattcaacctatccgcctggtgatatattg
gtttttctttcgggaagaaaagaaatagaatactgtataaaaaagattgaagattcctta
attcatgcttccgaagactgtcaaactttagttcctttacctttacatgctggtcttact
gttgacgagcaaatgcgagtttttaacatatatgatggtgacttcagaaaagttatattt
tctacgaatattgctgagactagtattactattgatggcatagtttatgtcgttgattca
ggttttaataaacaacggatatacaacccgtatacaaggacttcaaaattgattaacgtg
cctatatctaagtcaagtgctatacagagaagtggaagagctggaaggacaatgagggga
aaggtgttccgtctatatactgaaaaagcttacagcttgatgaaagaagaatttgaagca
gacatcttaaattgcgatatgtcaccgttggtgttatttttgaaaggtttagggctaaaa
aacatacttcagtttcccttttttgtccgtcctcccacagttcaccttatggcggctcta
gaggacctctatcttttaggtgtcttggacgaaagtggaaatttgacagacccacttggc
atacaaatttccaactcattcttggatgcaaacatctccaaagctttacttacttccaac
caatttggttgcactcatgaaattctttcaattgcttcaatacttacagcaggcgaagta
ttttataatcccacaagttcatcaaagaatgatgccttcgttgcccattcttcttttttt
gcaaatgaaggggacatcattaccgcattaaatgtttttgaatcttttgtcggtaacaaa
aaagatttacaatggtgcaggaaaaattatttgaactatcaaactttgcgccaagccctt
gacattcgcactcatttggttcgttttttaaataaattttctatacctactgctcaaaga
ttaccatccagtgattgttccaaaattttgaaatgcctacttgatggttttgtgcgtaac
gtcgcacatttacagaatgacggctcttacaaaacaataggaggaaagcaggtttggtta
gactctagtagtgtacttcatgaaaaaaaaacaccatggatcatgtattcttcagctgtc
gaatcagaaactcaaatattcgtgaagaatatttctaaaatagaaagtttttggctggat
aaatactataaacgagaaaaataa
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