Schizosaccharomyces pombe (fission yeast): 2542908
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Entry
2542908 CDS
T00076
Symbol
upf3, SPOM_SPAC13G7.03
Name
(RefSeq) protein upf3
KO
K14328
regulator of nonsense transcripts 3
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03013
Nucleocytoplasmic transport
spo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
2542908 (upf3)
03015 mRNA surveillance pathway
2542908 (upf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2542908 (upf3)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
2542908 (upf3)
mRNA cycle factors
P-body specific factors
2542908 (upf3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_7
YonP
Motif
Other DBs
NCBI-GeneID:
2542908
NCBI-ProteinID:
NP_593705
UniProt:
Q10267
LinkDB
All DBs
Position
I:join(2298979..2299133,2299193..2299299,2299350..2299924)
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AA seq
278 aa
AA seq
DB search
MAPDISKKRLPCKVLVFNLPPTLPEQVFLQSINSFLPHVEWHRFSKGKATVGTRSELLSF
AYLKFQSATAVQEFFRVYQGHTFIDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQD
PKFQEFKVQRESYSQTASNDDVIEKLQTSTPLLQYLAEKKNAVVEKGKSKPSKKSVKAKK
KLRLAEKPASNNSKAGKSSQESKKSSKAPAESAAAVIKEDKVSDRKKSKKKPKKTPVSNS
TASQASENASDKKTKEKKSSGKQKIASKKKDQLTTDNV
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggctcctgatatctcaaaaaaacgattaccatgcaaagtcctcgtttttaatttacca
ccaactttgcctgaacaagtgtttctccaatccatcaactcatttttaccacacgtggaa
tggcaccgattctccaaagggaaagcaactgttggtactcgatctgaattgctatccttt
gcgtatttgaagttccaatccgccacggctgttcaggaattttttcgcgtataccaagga
cataccttcatagataagaagaacaacacttatagggcaattgtcacaattgctccatat
caaaagattcctccttctaaagtaaaggcagatagtttagaaggctcacttgaacaagat
ccgaagtttcaagaattcaaggttcagcgggagagctattcgcaaactgcgtccaatgac
gatgttattgaaaaattacaaacctctactccattactacaatatcttgctgagaaaaaa
aatgccgttgtagaaaaaggaaaatcaaaaccatctaagaaatctgtgaaggctaagaaa
aagctacgcttggctgaaaagccggcatctaacaattcaaaagctggtaaaagctcacaa
gaatcaaaaaagtcttcaaaggcacctgctgaatctgcagctgctgtaatcaaagaagat
aaagtttctgatcgcaaaaaatctaaaaagaagccaaaaaaaacccccgtttctaatagc
actgcttctcaagcttccgaaaatgcctctgataaaaaaacaaaagagaagaaatcgtct
ggcaaacaaaagatcgcttctaaaaagaaagatcagctaacaactgataatgtttga
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