Schizosaccharomyces pombe (fission yeast): 2542930
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Entry
2542930 CDS
T00076
Symbol
vps53, SPOM_SPAC3A12.15
Name
(RefSeq) GARP complex subunit Vps53
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spo04131
]
2542930 (vps53)
Membrane trafficking [BR:
spo04131
]
Protein recycling
Others
EARP complex
2542930 (vps53)
Endosome - Golgi transport
Tethering complex
GARP complex
2542930 (vps53)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
Vps54_N
DUF724
Plexin_RBD
Fib_alpha
CALCOCO1
COG4_N
TMF_TATA_bd
CT398_CC
CCDC22_CC
Motif
Other DBs
NCBI-GeneID:
2542930
NCBI-ProteinID:
NP_593341
PomBase:
SPAC3A12.15
SPAC3A12.15.1
UniProt:
P87129
LinkDB
All DBs
Position
I:1446703..1448973
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AA seq
756 aa
AA seq
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MSNGNDNSLIIKNIGNNEFKFVETLHELLPEDITYDDLGSLRLSLSERLQESVKKLDANK
KTYEDAKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQMTSEIKNLDFAKQNLA
TSMTMLKRLQMLVTAYEKLRTLRQNQKFGEAISLMQATLQLLNFFKKYRSVERIASLSRS
ISEFQKSFYEQVFDTFQSQFKKESGMRGGFSPSSVQYLNELCRFIDIFAGDPPESVIRWY
CRHQLEDFMKVFRENEEAGSLENLPRRYTWFKKLLQTYDQLHKPIFPPHWKVDFRLYEVF
CEETKNDLSKLLKDDRLSLQVFVASLEQTLEFESFIDHRFYNTKSRFNSNFEPKERQAYN
ALSSVFEPHYTLYFNQQSQEFSILFENFALEKQTSTDESSQVLSSSIKLFQAYRKTLTQF
VRLTRSSPLVGLKNLFIKWLRRYTQVELLDYQESSTFKDIAIRLNTAEYIYRTTIELEKR
FQEISNKEFKDKMSFSEVLEVISSSRGTLLKFATGKFENVLNSDLEPLSKMDLKNIETVG
DQSSYVGGAVQNMTAKASEFLSVVDLNMFARNFCDRSCESFTRQFLNAIYLAKPISEVGA
EQLLLDLYSFKNALLKLPDLKQDYSITDSYINHLTIFMGYIETVLKTLLTPASPKAGFIQ
SYIFLVKDRSVTNFTVLLELKGVGKSDISSFLQQFSDFVKKTPQLEESSPIFKYLTINTA
VEQAATRSRLSLDLAPESSRTLQNLGRLFTSKKKHV
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatggaaatgataattctctaattatcaaaaatattgggaataatgaatttaaa
tttgtagaaacgcttcacgaattattaccagaagatatcacttatgatgatttgggttca
ttacgactaagcctgtcagaaaggcttcaagagtctgtcaaaaaattggatgcgaacaag
aagacttatgaagatgcaaaattaagtatgggtgaaaaaatggatgatttgaattcttca
attgttagtttgcttcaggaactttcaaccctgcaatcagtagccgaaaatacacaatct
tcgatcgttcaaatgacttctgaaatcaaaaacctagactttgctaaacaaaatttggca
acttctatgacgatgttaaagcggcttcaaatgttggtaacagcttatgagaagcttcgt
acgcttcgacaaaatcaaaaatttggagaggcaatttcattgatgcaggctactcttcaa
cttttgaatttttttaagaaatacagaagtgtcgagaggatagcttcattaagccgtagc
atctctgaattccaaaaatcattctacgagcaagtatttgatacttttcaatcacaattt
aaaaaggaatcaggaatgcgtggaggatttagcccttcttctgtgcaatatttgaatgag
ctatgtagattcattgatattttcgctggagatcctcccgagtctgtaattcggtggtac
tgccggcatcaacttgaagactttatgaaagtatttcgtgagaacgaagaagctggttca
cttgagaatcttcccagaagatacacttggtttaaaaagctgttacaaacatatgatcaa
cttcataaaccaatatttcctccgcattggaaagtggactttcgattgtacgaagtattt
tgcgaggaaaccaaaaacgacttgtctaaacttcttaaagatgataggttatctttgcag
gttttcgttgcctcgttggaacaaacgctcgaatttgaatcatttatagaccaccgcttt
tataatacaaaatctcgatttaattctaatttcgaacccaaagagcgccaagcttataat
gcgctttcaagtgtatttgaaccacactatactttgtatttcaaccaacaatcccaagaa
ttctctattttgtttgaaaactttgctttagagaagcaaacatctaccgatgagtctagc
caagttctatcttcctctataaaattattccaggcctacagaaagactttgactcaattt
gtacgccttaccagatcttcaccccttgtcggtttgaaaaatttgtttataaagtggttg
cgtaggtatactcaggtggaattattggattatcaggaaagctcgacatttaaagacatt
gccattcggctcaacactgctgagtatatttatagaaccacaatagagcttgagaagcgt
ttccaagaaatttctaataaagaattcaaagataaaatgtcgttctcagaggtattagaa
gttatctcgtcttcaagaggaactttattaaaatttgccacaggcaaatttgagaacgtt
ttgaattcagatttggagcctctatctaaaatggatttaaaaaacattgagacggtgggc
gaccaaagttcttatgttgggggtgctgttcaaaatatgactgcgaaagctagtgaattt
ttatcagtagttgatttaaatatgtttgcccgaaacttttgcgatcgctcatgtgaatca
tttactaggcaatttttaaatgccatatatcttgcaaagcctatttccgaagttggagct
gaacagcttttactggatttatattcatttaaaaatgctttacttaagttgcctgattta
aagcaagattactcaataaccgacagttatatcaaccacttgacgatatttatgggatac
atcgaaacagttttaaaaacattacttacgcctgcttctccgaaagctggttttattcaa
agctacatttttctggtaaaagatcgttcagttaccaattttaccgttttgttagaatta
aaaggagtagggaaaagtgacatatccagtttccttcaacaattttcagattttgtaaag
aaaactcctcagctagaagaaagttctcctatattcaaatacttgactataaacacagct
gttgaacaagctgctactcgctccagattatctttagacttggcgcccgaatccagccga
acgctgcaaaacttgggcaggctgtttacttcaaagaaaaagcacgtttaa
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