Schizosaccharomyces pombe (fission yeast): 2543089
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Entry
2543089 CDS
T00076
Symbol
pfs2, SPOM_SPAC12G12.14C
Name
(RefSeq) mRNA cleavage and polyadenylation specificity factor complex, WD repeat protein Pfs2
KO
K15542
polyadenylation factor subunit 2
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
2543089 (pfs2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2543089 (pfs2)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
2543089 (pfs2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_Gbeta
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_TEP1_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR41
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_HPS5
eIF2A
Beta-prop_SCAP
Beta-prop_WDR75_2nd
PEP5_VPS11_N
Tricorn_2nd
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
Ge1_WD40
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
2543089
NCBI-ProteinID:
NP_592884
PomBase:
SPAC12G12.14c
SPAC12G12.14c.1
UniProt:
Q9UTN4
LinkDB
All DBs
Position
I:319974..321503
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AA seq
509 aa
AA seq
DB search
MERAENARIIQKPMTRRTVDYGSGLSKYIVNRHLRSNRYHIHVPRPNPNQIINLYPPYEY
KYNNTSSLCTKYIHTSANKARHVINVVRWTPDGRRLLTGSSTGEFTLWNGLTFNFELINQ
SHDYAVRCAEWSTDGRWLISGDGGGMVKYFEPNLNNVKIVQAHEMEVRDVAFSPNDSKFV
TASDDGSLKVWNFHMSTEELKLTGHGWDVKTVDWHPSKGLLASGSKDNLVKFWDPRTGTC
IATLHGHKNTIMQASFQKNFGSNYLATVSRDSTCRVFDLRAMKDVRVLRGHEKDVNCVTW
HPLYPNLLTTGGSDGSVNHYSLDEPPLLSQQKYHEKHPNVTLSASSYLLYPTAEIPFAHD
LGIWSMQYHPLGHLLCTGSNDKTTRFWSRSRPDDKESTMDRHHLGEEQSEAMLSQRKAAI
EEDDNYEPDENPLTETLANAHNPQFSGVLNLPGLGTMPSFPSPYQHGQPQIPGMLHASLS
NSYAEPSTQNSFIPGLTSKSQDGYPQNYR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggaaagagctgaaaatgctagaattattcaaaagcctatgactcgtaggactgtggac
tatggatcagggctatcaaagtatattgtcaatcgacatttgcgtagcaatcgctatcac
atacatgtaccgagaccaaatccgaatcaaataattaacttgtatcccccttatgaatac
aagtataataacacatcttccttgtgcaccaaatatattcatacgtctgcaaataaagct
agacatgttattaacgttgtgcgctggactccagatggtcgaagactgttgacaggttct
tcaactggtgaatttactctgtggaatggtctcacatttaattttgagttaattaatcag
agtcatgattatgccgttcgttgtgctgaatggagtacagatgggcgctggcttatttcc
ggcgatggaggaggcatggtaaagtattttgaaccgaatttaaacaatgtcaaaattgtt
caagctcatgaaatggaagttagagatgttgccttttcacccaatgatagcaaatttgtc
acagcgagtgatgatggttcattaaaagtatggaatttccatatgagtactgaagagctg
aaactaactggtcatggatgggatgtaaaaaccgtcgattggcatccttcaaaaggtctc
ttggcttctggttctaaagacaatttagtgaaattttgggatccaagaaccggtacatgt
attgcgactttgcatggtcataaaaacacaataatgcaagcatcttttcagaaaaatttt
ggatcaaattatttggctacagtctctagggatagcacttgtcgagtatttgacttacgt
gccatgaaggacgttcgagttttacgtggtcatgaaaaggacgtaaactgcgtaacatgg
catcctctttatcctaatttgcttactactggtggctccgatggaagtgtcaatcattat
tcacttgatgaacctccattactttctcagcaaaagtatcatgaaaagcatccaaatgtt
actctttccgcgtcttcttatttactataccctactgctgaaattccatttgctcatgat
ttgggtatttggagtatgcaatatcatcctcttggacatcttttatgtacaggttcaaat
gataaaactacacgtttttggtcaagatctcgcccagatgacaaggaatccaccatggat
cgccatcatttaggtgaagaacagtctgaggccatgctaagtcagagaaaagcagcgatc
gaagaagacgataattatgaacctgacgaaaaccctctcaccgaaacattagcaaatgcc
cataatccccaattttctggagtacttaatcttccgggtttagggactatgccctccttt
ccatcgccttatcaacatggacaacctcaaattcccggtatgcttcatgcatctttgagc
aattcatacgctgagccgtcaactcaaaactcttttatcccaggtctcacctcaaagtca
caagatgggtatcctcaaaactatcgataa
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