Schizosaccharomyces pombe (fission yeast): 2543278
Help
Entry
2543278 CDS
T00076
Symbol
prp12, SPOM_SPAPJ698.03C
Name
(RefSeq) U2 snRNP-associated protein
KO
K12830
splicing factor 3B subunit 3
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
2543278 (prp12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spo03021
]
2543278 (prp12)
03041 Spliceosome [BR:
spo03041
]
2543278 (prp12)
03036 Chromosome and associated proteins [BR:
spo03036
]
2543278 (prp12)
Transcription machinery [BR:
spo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
2543278 (prp12)
Spliceosome [BR:
spo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
2543278 (prp12)
Complex B
2543278 (prp12)
Complex C
U2 SnRNP specific factors
2543278 (prp12)
Chromosome and associated proteins [BR:
spo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
2543278 (prp12)
TFTC complex
2543278 (prp12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
2543278
NCBI-ProteinID:
NP_594414
PomBase:
SPAPJ698.03c
SPAPJ698.03c.1
UniProt:
Q9UTT2
LinkDB
All DBs
Position
I:complement(4038144..4041764)
Genome browser
AA seq
1206 aa
AA seq
DB search
MDTFPSLFLYSLTIQNSNYVQSSCAASLSGKKAQEIVIATESRLLIYKVDATDGRMNCIL
NQNCFGIIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGKSGIRR
VVPGEYLAIDAKGRAAMIASVEKNKLVYVLNRDSEANLTISSPLEAHKANNICFHLIGLD
TGYANPIFAALEVDYSEIDHDSTREAFTSSEKVLSYYELDLGLNHVVKRWSKVVDRNSYM
LIPVPGGNDGPSGTLVISNGWISYRHLQKAFHQIPILRRQAASANAISTPWNQVNSNSAN
DGPLIVSAVLHKMKGSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPLAVQLNI
LKTGFLFVATEFGNHQLYQFENLGIDDDELEITSLDFQAQDNEVGTKNVHFGVRGLQNLS
LVEEIPSLYSLTDTLLMKAPSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELPGA
PIAIWTLKLNQTDVYDSYIILSFTNGTLVLSIGETVEEISDSGFLSSVSTLNARQMGRDS
LVQIHPKGIRYIRANKQTSEWKLPQDVYVVQSAINDMQIVVALSNGELVYFEMSDDVEGG
QLNEYQERKTLTANVTSLALGPVQEGSRRSNFMCLACDDATVRVLSLDLYTTLENLSVQA
LSSPANSLCIIPMNVNGVSTLYLHIGLMNGVYLRTVIDVTSGQLLDTRTRFLGPRAVKIY
PITMKNQNTVLAVSSRTFLAYSYQQNLQLSPIAYSAIDHASSFASEQCPEGIVAIQKNTL
KIFTVDSLQDDLKSDIYPLICTPRKIVKHPNFPVLYILQSERNFDSFKYAQENGDVGSSY
TKEKQNEHTSKSWVSFISVFDMISKKIIHESPLGDNEAAFSMTAAFFKNRDEFFLVAGSA
TNMDLECRTCSHGNFRVYRFHDEGKKLELISHTEIDGIPMALTPFQGRMLAGVGRFLRIY
DLGNKKMLRKGELSAVPLFITHITVQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIH
RWTTTNVLVDYDTLAGGDKFGNIWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLD
LMAHFFTNDIPTSLQKVQLVEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQQLEFLLRK
ECPPLAGRDHLAYRSYYAPVKCVIDGDLCEMYYSLPHPVQEMIANELDRTIAEVSKKIED
FRVRSF
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggacaccttcccttctctgtttctatattccttaacaatacagaatagtaattatgtt
caaagttcgtgtgccgcgtccttgtctggtaaaaaggcacaggagatagtaattgctaca
gaatcaaggttgcttatatataaagttgatgcaactgatgggagaatgaattgtatttta
aatcaaaattgttttggtattattcgaaatgttgctcctttgagattaactggttttaaa
cgcgattatctcgtagtcacgtcggattcaggacgaataaccattttggaatataacgtt
gaaaaaaataaattagtgccaatataccaggaaacttttggaaaatcaggaattcgaaga
gttgttcctggtgaatacttagccatagatgcgaaggggagggccgctatgattgcatct
gtggagaaaaataagctggtttacgtactaaatcgagattcagaggctaacctaacaata
tcttcaccacttgaagctcataaagctaataatatatgtttccatttaattgggttagat
actggttatgctaatcccatcttcgctgccttagaagtcgactacagcgaaatagaccat
gactcaactagagaagcatttacatcttcggaaaaggttttatcatattacgaattggat
ttgggattaaaccatgttgtcaaaagatggtcgaaggtcgttgacagaaattcttatatg
ttaatccctgttcccggtggtaatgatgggccctccggtacactagtaatatctaacgga
tggatttcctaccgtcaccttcagaaggcatttcatcaaattcccattttgcgtcgtcaa
gctgcatcggcaaacgccatatccactccatggaatcaagtcaattcaaactctgcaaat
gatggtcctttgattgttagtgctgttctccataaaatgaaaggatcgtttttttatctt
ttacaaactggtgacggggatttgctgaagctgacaatcgagcatgatggtcaagggaat
gttgttgaactaaggttaaaatattttgatacagttcccctggcagttcagttaaatatt
ttgaaaactggttttctattcgttgccacggaatttggaaaccaccaattgtatcaattt
gagaatttaggtattgatgatgatgaattggaaattacttctttagatttccaagcccag
gacaatgaagtcggtacaaaaaatgtgcattttggagtccgcggtctacagaacctttct
ttggttgaagaaataccaagcctatattcgttaacagatacgttacttatgaaggcgccc
tcgtcaggcgaagctaatcaattatatacagtatgtggaagaggctcaaactcttctctg
cgtcagttgagaaggggtttagaaaccacagagatcgtagcgtcagaacttcccggtgcc
cctattgcaatttggacattgaaattaaatcaaaccgacgtttatgactcttatattatt
ctttcgtttacaaatggaaccttggttctttctattggagagacggttgaagaaatatct
gatagtggatttttatcatcagtctcaactctaaatgcgaggcaaatgggaagggattcg
ttggttcaaattcatcctaaaggtattcgttatattagggctaataagcaaacaagtgaa
tggaaattacctcaggatgtgtacgttgtacagtcggcaattaatgatatgcaaatagtt
gttgctttaagcaatggagaactcgtttattttgaaatgagtgatgatgttgaaggaggt
cagctcaacgaatatcaagaaagaaaaacgcttactgctaatgtaacttctttggcttta
ggccccgtacaagaaggatcaagaagaagtaattttatgtgcttagcatgtgacgatgct
acggtgagggtgttgtctctcgatttgtacacaaccttagaaaatttgagtgtacaagcc
cttagttctcctgccaattctttatgcataattccgatgaacgtaaatggtgtgagtact
ctctatttacatataggtttaatgaatggtgtctatttacgaactgttatcgacgttaca
tccgggcaacttttggatacaaggactagattcttgggtccacgagctgtcaagatctat
ccaataaccatgaaaaatcaaaatacggtgttggcggtgtcttctcgtaccttccttgca
tatagttatcaacaaaacttgcaactatcaccaatcgcttattctgcaattgatcatgct
tcatcttttgcaagcgaacagtgtccagaaggtattgtagcgattcaaaaaaatacttta
aaaattttcacagtcgatagtctgcaagatgacttaaaatctgatatttatccgttaatt
tgtacccctcgaaaaatcgttaaacatcccaactttccagttttgtacattttgcaaagt
gaaaggaactttgactcatttaaatatgctcaagagaatggagatgtgggttcttcgtat
acgaaggagaagcaaaatgaacacacatcaaaatcttgggtgtcatttatatctgtattt
gatatgatatctaaaaaaataatccatgaaagtccgctgggcgataacgaagctgctttt
agtatgacagccgcttttttcaaaaatagagatgaattctttttggtagctggttctgcc
actaatatggatcttgaatgtcgaacctgttctcatggaaactttcgagtataccggttc
cacgatgaaggtaaaaagcttgagttaatcagccatacggaaatcgatggaattcctatg
gctttaactccctttcagggacgtatgctagctggagttggacgctttttacgaatttat
gatttaggaaacaaaaaaatgcttcgtaaaggtgagttgtctgctgtaccactatttatt
acacatattacagttcaagctagtaggatagtggttgcagattcgcaatactcagttaga
ttcgttgtctataaacctgaggataatcacctactaacttttgctgatgatactattcat
cggtggactactacaaatgtccttgtcgattatgatactttagcagggggggataaattt
ggtaatatttggcttttacgctgccccgaacatgtttctaaactagctgatgaagagaat
tctgaatctaaattaattcacgaaaagccctttttaaattccacacctcacaaattggac
ctaatggctcatttctttacaaatgatattcctacttcgcttcaaaaggtccaattggtt
gaaggagctcgagaagttttgttatggaccggtcttctgggtactgttggagtatttacc
ccttttattaaccaggaagatgttcgattttttcaacaactggaatttttgttgcgaaaa
gaatgtcctcctttggctggaagggatcatcttgcttatcgtagttattacgctccagtc
aaatgtgttatagatggtgatctctgcgagatgtactattcgttacctcatccagttcag
gagatgattgccaatgaactcgatagaacaattgcagaggtttcaaaaaaaatagaagat
tttcgtgttcgtagtttttaa
DBGET
integrated database retrieval system
