Schizosaccharomyces pombe (fission yeast): 2543409
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Entry
2543409 CDS
T00076
Symbol
prp40, SPOM_SPAC4D7.13
Name
(RefSeq) U1 snRNP-associated protein Prp40
KO
K12821
pre-mRNA-processing factor 40
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
2543409 (prp40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spo03041
]
2543409 (prp40)
Spliceosome [BR:
spo03041
]
Complex A
U1 snRNP components
U1 related factors
2543409 (prp40)
Complex B
2543409 (prp40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
2543409
NCBI-ProteinID:
NP_594966
PomBase:
SPAC4D7.13
SPAC4D7.13.1
UniProt:
O14176
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All DBs
Position
I:5375612..5377699
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AA seq
695 aa
AA seq
DB search
MSAPPWQTSEYDETEGFTSNQEGPSAAPSKTVASDWHEVKTEDSRVYYYNSVTRKSVWEK
PEELMNDFEKKLSKLAWKEYATADGKKYWYNVNTRESVWDIPDEYKAALVDEPEQQKKAL
SSKIKSNDNKPAVQSIQRHGPDVAAPSSQPAKDQSQQISQGSHKRTINFVQQKDKRQKRS
NDYQHENYDTYEAAERAFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCAFD
AYILNYLTDQSDAEKNRVTKIRKEFIEMLKSSDKIHSYTLWRTVKNEFSSHPAFNATSSE
TEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRNMNFEPYTRWSVAQAKFDQDPR
YTRNSNMKYLSKLDALVAFEDHVKHLEREYILDKQKQKKEKHRIERKNRDAFRALLQDLR
VQKKITLRTKWKELYPIIKDDPRYLNLLGQSGSTPLDLFWDTIVDLENMYREKRNLVLDC
LEVLQISVDDTSNIPEIIARLSEKLKDREESEAVTEDLIEEVVNRLRDKAIHKKAEEKRA
DERRIRRKIDNLRSAIKYLKPPISADASYDEIRPLISILPEFAALHSEEHRMAAFDKYIR
RLREKRELEKQYQNRRGYYDVGKDESYLANSARPHSGYEDGRLEYSADLASKSNRNEINT
MQDVQENSISHVTATQPAVKNIVDDAESSEEGEIR
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcacctccatggcaaacttcagagtacgatgaaactgagggattcacgtctaat
caggaagggccgtcagcagctccttccaagactgtggcctctgactggcatgaagtgaag
acagaagattctcgagtttattactacaactcagtaacgcgcaaaagtgtttgggaaaaa
ccagaggagttaatgaatgactttgaaaaaaagctttcgaaactagcttggaaagaatat
gccaccgctgatggcaaaaagtattggtataatgtcaatacccgtgaatcagtgtgggat
attcctgatgaatataaagctgcccttgttgatgaaccggaacagcaaaaaaaggctttg
tcgtctaaaatcaaaagcaatgacaacaagccagctgttcaaagcattcaacggcatggt
ccggatgttgctgctccttcaagtcaaccagctaaagatcaaagccaacaaatttcacaa
ggcagtcataaacgaactataaactttgttcaacaaaaggataagcgccaaaaacgttct
aatgattatcagcacgaaaactatgatacctatgaagccgcagagcgcgctttctttaaa
tttttagactctcataatgtcaacccaagctggacttgggagcagactgtccgagagctt
tgtgatgctaagggctattatgtcatgaaggatccttggcatcggaaatgtgctttcgat
gcgtacatcttaaactatttgaccgatcaaagtgatgcagaaaagaaccgagtaactaag
attaggaaggagtttattgagatgctaaaaagtagtgataaaattcattcttatactttg
tggcgtactgtgaagaatgaattttcttctcatcctgcttttaacgctacttcttctgaa
actgaacaacaacaactattttttgaatataagcaaaagcttttagaggatgaaaagcag
ttggaaaaggatcgcagaaaggaagcattggatgatttttgttcgcttttgcgaaacatg
aatttcgagccttacacccgctggagcgttgcgcaagcaaaatttgatcaagatccaagg
tatacaaggaattcaaatatgaaatatctttctaaattagatgctcttgtagcatttgaa
gatcatgttaagcatttggaacgcgaatatattcttgacaaacaaaagcagaagaaagaa
aagcatcgtatagaaaggaaaaatcgtgatgcctttcgtgcgctattacaagacttacgc
gtgcaaaagaagattacattacgcacgaagtggaaagaattatatcccataatcaaggat
gatccaagatatcttaacttactagggcaatctggctctacaccattagatttattttgg
gatacgatcgttgatttggagaatatgtatcgggaaaagcgtaatttggttttggactgt
cttgaagtattgcaaatatctgtggatgacacatctaatattcctgaaattatagcaagg
ttatcagaaaagcttaaagatcgagaggaaagtgaggcagtaactgaagaccttattgaa
gaagttgttaatcgattacgtgataaagcgatccacaaaaaagctgaggaaaagcgtgct
gatgaacgacgcattcgaaggaaaattgataatctcagaagtgccattaaataccttaaa
cctccaatttctgccgatgcttcttacgatgaaattagacctttaatttctattctaccg
gaatttgctgcgctccattccgaggaacacaggatggctgcttttgacaaatatataaga
cggcttcgagaaaaacgggaattggaaaagcaataccaaaacagaagaggttattatgat
gtcggtaaagatgaaagttatttagcgaatagtgcccgaccacatagcggatacgaagat
ggaaggttggaatattctgctgacttagcgtcaaaaagtaataggaatgaaattaatacg
atgcaggatgtacaggaaaattcaatctctcatgttaccgctacacaaccggctgttaaa
aatattgttgatgatgcagaatctagtgaagaaggtgaaattcgttag
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