Schizosaccharomyces pombe (fission yeast): 2543425
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Entry
2543425 CDS
T00076
Symbol
atg13, SPOM_SPAC4F10.07C
Name
(RefSeq) autophagy-associated protein kinase regulatory subunit Atg13
KO
K08331
autophagy-related protein 13
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo04136
Autophagy - other
spo04138
Autophagy - yeast
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04138 Autophagy - yeast
2543425 (atg13)
04136 Autophagy - other
2543425 (atg13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spo04131
]
2543425 (atg13)
03029 Mitochondrial biogenesis [BR:
spo03029
]
2543425 (atg13)
Membrane trafficking [BR:
spo04131
]
Autophagy
Autophagosome formation proteins
ULK complex
2543425 (atg13)
Atg1 complex
2543425 (atg13)
Mitochondrial biogenesis [BR:
spo03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
2543425 (atg13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
2543425
NCBI-ProteinID:
NP_594750
PomBase:
SPAC4F10.07c
SPAC4F10.07c.1
UniProt:
O36019
Structure
PDB
PDBj
LinkDB
All DBs
Position
I:complement(join(4840846..4842891,4843136..4843231,4843310..4843444))
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AA seq
758 aa
AA seq
DB search
MPRLNTQLPRMYSAPPGHSKAVSTELNKDLSSVGGRSAKLGQVIHHCFYKTGLIILESRL
NVFGTSRPRESSKNNKWFNLEIVETELYAEQFKIWKNIELSPSRKIPPMVLHTYLDISDL
SKNQTLSVSDGTHSHAINFNNMSTMKIVLERWIVNLDGEALSTPLELAVLYKKLVVLFRS
LYTYTHLMPLWKLKSKIHKLRAHGTSLKVGCALSTDDVLSNDFLPISAPISSSLGSSIAT
FSFSPVGTPAGDFRISVQYRKNCHFEVHDSDALLSNQLLSADKHQLAASNNSQDFEDGKQ
YDQPPPSFATRLAKQSDPNSLLQSEIQHLASIESITAQAAPLVTIHPFKSPSLSASPGSN
FDNMSISPKVAVNRYIHRGPSATSLNKFSMISDAASKSRAKLPPLTSGSLKLNTLDISNT
PNLRRFSSSFGPRERKESFSSRNRLPLVNHPIRSIFKHNVSENPITDHSEHAVYDSEFAS
KDDLSGFIQLLDSHAHHLNASEGSKSSGSFPGKVQTLTSGISPVAHPHNSLGSSNEIFDI
DTYNHSIDNSGSRFTEAVKHNLGNSSHSIMRHHTLGTLRSRPSFSEKSTFPAPLTSISQA
STFQGDNRSPSTVIPHTQTEVPSANDTSKQLASLHDMRKSQSPICARSATSAGLPRFEYH
TSLSKSLEHSSTPASLQATKTPSPSFVLEPGIPQEYKKHFDNLSEERRQCLTPSTPTYEY
YNEHNPNYDDDLLFTMTDMTLEPHDVSAIRLGSPKSDD
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgccgagacttaatacgcagcttcctcgaatgtattctgctccccctgggcatagtaaa
gcagtttcaactgagttaaataaagatctatcatcagtgggtggtaggagcgctaagctg
ggccaagtcattcaccattgtttttataaaaccggattaataattttggaatccagacta
aatgtatttgggacctctcgtcctcgagaaagttctaagaataacaaatggttcaatttg
gaaattgttgaaactgagctttatgccgagcaattcaaaatttggaagaatattgaactt
tctccttcacgaaaaatacctccaatggttttgcacacatatttagatatatctgattta
tcaaaaaatcaaaccctttctgtttccgatggtactcattctcacgcaatcaactttaat
aatatgtcgacaatgaaaatcgtacttgaaagatggattgtgaatttagatggcgaagcc
ttatcaacccctctggagttggctgttttgtacaaaaagttagttgttttatttcgttcc
ctctacacttatacccatcttatgcctctgtggaaattgaagtcgaaaatacacaaatta
agagctcatggtacatctttaaaagttggctgtgccctctctacggatgatgttttatcg
aatgatttccttcctataagtgctccaatttcatcctcgctcggaagcagtattgcaact
ttctctttcagccctgttggtacaccagctggagattttcgcatatctgttcagtatcgt
aaaaattgtcattttgaggttcatgattctgatgcgttactctctaaccagttgttatct
gcagacaagcatcaacttgctgcttcgaacaattctcaagattttgaagatggcaaacag
tatgatcaaccacctccttcttttgcaacgcggttagctaagcagtcggatccgaattct
cttttacaatctgaaatccaacatttagctagcattgagtctataacagctcaagcagct
cctcttgttactatacatcctttcaaatctccgtcattatctgcttccccagggtcaaat
tttgacaatatgtcaatttctccgaaggttgcagtcaatcgttatatacatcgcggacca
tcagccacctctttaaataaattttcaatgatttctgatgctgcaagcaaatcaagagca
aaattgccacctcttacatctggaagtcttaagcttaacacacttgacatttccaatacc
ccgaatcttcgacgatttagcagtagtttcggtccccgcgagcgtaaagaaagctttagc
tctcgtaatcgtttaccgctagtcaatcatcctattcgtagcattttcaaacataacgtc
tcagagaatcctataacagatcattctgagcatgctgtttatgatagtgaatttgcatca
aaggatgatcttagcggttttattcaactattagatagtcatgcacatcatttaaatgct
tcggaaggtagcaaatcaagtggttcatttccagggaaggtacaaactttgacatctgga
atttcgccagttgctcaccctcataattccttgggtagtagcaatgaaatttttgacatc
gatacctataatcattcaattgataatagcggatcccgttttactgaggctgtgaagcat
aatcttggaaattctagccatagcatcatgcgccatcacactttaggtacgctgcgatct
cggccttccttctctgaaaaatctaccttccctgctcccctgacatccatttcacaagct
tccacgttccaaggagataaccggtctccaagcactgttattcctcatactcaaactgaa
gtaccatcagcaaacgatacttcaaagcaactagcatctcttcacgatatgcggaaaagt
caatcaccaatttgtgctagatcggctacttctgctggacttccgcgtttcgaatatcac
accagcttatccaaatcactggaacattcatcaacgccagcaagcctacaagcaacaaag
acgcccagcccttcttttgtacttgagccgggaatcccacaagagtacaaaaagcacttt
gataatctttctgaagaacgacgtcaatgtcttactccttcaacacctacttacgaatat
tacaatgagcataaccccaattatgatgatgatttattgttcacaatgactgatatgact
cttgaaccccatgatgtttcagctattaggcttggttctcccaaatccgatgattaa
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integrated database retrieval system
