Schizosaccharomyces pombe (fission yeast): 2543538
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Entry
2543538 CDS
T00076
Symbol
pta1, SPOM_SPAC1071.01C
Name
(RefSeq) cleavage and polyadenylation specificity factor complex subunit Pta1
KO
K06100
symplekin
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
2543538 (pta1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spo03021
]
2543538 (pta1)
03019 Messenger RNA biogenesis [BR:
spo03019
]
2543538 (pta1)
Transcription machinery [BR:
spo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
2543538 (pta1)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
2543538 (pta1)
U7-dependent histone pre-mRNA processing factors
2543538 (pta1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
2543538
NCBI-ProteinID:
NP_594351
PomBase:
SPAC1071.01c
SPAC1071.01c.1
UniProt:
Q10222
A0AAN2H7U2
LinkDB
All DBs
Position
I:complement(join(3855626..3855790,3855792..3857792))
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AA seq
721 aa
AA seq
DB search
MEVSETDEHLTRLNQARDIVKTDQSLFPEIVRNILSVANYSDIRYKKWMANFLWFGFSSK
NVKFEQKLDLAVTCLDTIVSLYAVDNEEVKKDVISCSCTIYPLVFLHCCTSPNDSSTWDT
LTKLKNEIINDFDKGNKPLLISCIKFISCVILTQVPGIRDPRLVTKSDVSLSKVPTHHPF
INSNILRIEANDLIEKIFSILFSDSLNVLYITSVLNILPVLVKRRKELAPKIIGSLLEFH
LPNPKDEIELSNESKLAIRCIEKNLKLILLHLAKSTGASSSSVEKIHAYLSGQIYHTKVD
ESLKKRQYEGNISAASKRVKSSAVQSLVERMQPQLSSHDGLQNNPLISIFASQTAINPLA
NFDVTSIPVEVATEIVLTSLLKIDKNYFHQQINMLRERVRSLSEPESLGLDQQVDEDEDE
DYEPPEVDVQTINASVEREAARLEGSAPSNVVTDAFELPTPDSLSPMAILEYFHGALSRL
FDYAPQFERSIVSSSNLQNLTLENVDNTVWDKRHWAILLPRLCTRGLLNYQPVTSGEESG
DASFTLSSFVRGQLFTYVASNWRSSTNLILNWLSEEWYNDRLMLENPDCHEYEDVKWEGP
QYEKWALKVIDSILPYLEAKDKVFMIFMSELPELTDAIVDKIKFVCLDPDKTKLGFMTFQ
YLIMFRLPVREKCLDILETMWKENVDVKASAAKLLNRWRPSFLESVKSEETKEPSATDNT
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggaagtttcggagacagacgaacatcttactcgtttaaaccaggctcgagatattgtt
aaaactgatcaaagcctttttccagaaatcgtgagaaacattctttctgtggcaaactat
tctgatataaggtataaaaaatggatggcaaatttcctctggtttggattttcgagcaaa
aatgttaaatttgagcagaaattggatttagctgtaacttgtctagatacaattgtttct
ctgtacgcagtagataatgaagaagttaaaaaagacgttatatcttgttcttgcacaatc
tacccactagtatttctgcactgttgtacttcacctaacgattcatctacctgggacact
ttaacgaagctaaaaaacgaaatcattaatgactttgacaaagggaacaagcctctttta
atttcttgtattaaatttatttcttgtgtaattttaacgcaagtgcctgggattcgagat
ccccgtcttgtaactaaatcggacgtgtctctttctaaggttcccacacatcatcctttt
atcaattcaaatatcctcagaatagaagcaaatgacttaattgaaaaaatattttccatc
cttttctcggattctttgaatgtcctttacattactagcgttttgaatatcttaccggtt
ttggtgaagcgacggaaggaactagcaccaaaaatcataggaagcttgttagaatttcat
cttccgaatccaaaagatgaaattgagctgtcgaacgaaagcaagttagctatacggtgt
attgaaaaaaatctaaaacttattttacttcatttagctaagagtacaggtgcatcttct
tcttccgtcgaaaaaattcacgcttatctttccggacaaatttatcataccaaagtcgat
gaaagtttgaagaaacggcaatatgagggaaatattagtgctgcctctaagcgtgttaag
tcttctgctgtacaaagtcttgtagaaagaatgcaaccccaacttagctctcacgatggt
ttgcaaaataatcccttaatcagcatatttgcttcacaaactgctataaatcctcttgca
aattttgatgtaacttcaattccggttgaagtggctactgaaattgtacttacttctctt
cttaagatagacaaaaactactttcatcagcaaattaatatgttgagagagagagtgcgc
tctctctctgagcctgaatcccttggtcttgatcaacaagttgatgaagacgaggacgag
gattatgaaccgcctgaggtagatgttcagactatcaatgctagtgtagaacgtgaagca
gctcgactagagggaagtgctccctccaatgtcgttactgatgcgtttgaattacccact
ccagattcgctgtccccgatggctattctagaatactttcacggtgccttatccagatta
tttgattatgctcctcaatttgaaagaagcatagtttcttcttctaaccttcaaaattta
acgttggaaaatgtggataatacggtatgggataagcgtcactgggcaattctcttacca
cgactttgtacgcgaggcttattgaattatcagcctgtaacgtctggtgaggaatctgga
gatgcttctttcactttgtcttcatttgttcgagggcagctttttacttacgttgcatct
aactggcgttccagtacaaatttaatattgaactggttatccgaggaatggtataatgat
cgactaatgcttgaaaatccggattgtcatgaatatgaggatgttaagtgggaaggtcca
caatatgaaaaatgggcccttaaagtaatagacagcattttaccatacttagaggcaaaa
gataaagtttttatgatatttatgtctgaattgccagaactcaccgatgctatagttgac
aaaattaaatttgtatgtcttgatcccgataagacgaagctcggtttcatgacttttcag
tatttaataatgtttcgactacctgtacgtgaaaaatgccttgatattcttgagacgatg
tggaaagagaatgtagatgttaaagcttccgccgcaaagcttttgaatcgttggcgaccg
tcgtttttggagtctgtgaaatcagaggaaacgaaagagccttccgctacagataacact
tcctag
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