Schizosaccharomyces pombe (fission yeast): 2543630
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Entry
2543630 CDS
T00076
Symbol
rrp6, SPOM_SPAC1F3.01
Name
(RefSeq) exosome 3'-5' exoribonuclease subunit Rrp6
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
2543630 (rrp6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2543630 (rrp6)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
2543630 (rrp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
2543630
NCBI-ProteinID:
NP_593004
PomBase:
SPAC1F3.01
SPAC1F3.01.1
UniProt:
Q10146
LinkDB
All DBs
Position
I:join(610886..611152,611211..613277)
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AA seq
777 aa
AA seq
DB search
MDESELFKGLMNSTAYCSELAKVDIPFYKSIDTEFNENIKSVSSRFMRLIELLLSKVDRS
RAEDIVDVEDIDNRWAEVSDTLDILFEKADYSIDKAQGLLKKPAIETHASTSDVANKKPK
KEKLPYKVIHAAHLTKPQLRFRVQPNNSREFVWSWKLTEKPHSLVPLEKIIAQVKLDPSL
KNSLPHPYEPEIQNSVYPPWVSEMSNPIDTGSVDETEPIWVSTESQLSDMLKELQNSKEI
AVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVFHGATM
DIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPLP
REMLKYAQSDTHYLLYIWDHLRNELISKSAERKENLMQSVFNSSKQISLRKYELEPYDPI
YGLGTDGWRNVLTKFGSSKIIGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLIAIA
ASKPVEAADVFSISKQLTPIARMYVEDIVKVVQEAEKLYNEQVDREKSQFKEVEKQNQPL
AVFSESNTLGDYKVDSSVFEISKQNRSKLKTLLANGSAFWIEGQSQDDLRKARKERLFIV
NQNIPFSLTLPCTQGHVESELNVKQSTVTEAANPSLNGEKKQEPIVIRDLGLNKQKRDSS
KLNHKEPSNPIEERNEDIEPSEASTSVSKKRKQKKKKKNSGKLTIEAEHVSNDSPIINEA
PFDYKNQKNFIADLDSDVGKNKFGKRGFNPLNKVSLPKRNTRELKKRKVSDGKSTSY
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtcagaattgtttaagggtttaatgaatagtacagcctattgctctgaattg
gcaaaggttgatataccgttttataaatcaattgataccgaattcaatgaaaacataaaa
agtgtttcttctcgttttatgagattaattgaattgcttctttctaaagtagacagaagt
cgggcggaggatattgtggacgttgaagatatagataatagatgggcagaagtatcggac
acattagacatactctttgaaaaagctgactattctatcgataaagctcaaggactttta
aaaaagccagcgatcgaaacccatgcgtcgacaagcgatgttgccaataaaaaaccaaag
aaagaaaagttgccctacaaggttattcacgcagctcatcttactaagcctcaattaagg
tttcgagtacagcctaataattccagggagtttgtgtggtcttggaagttaactgaaaaa
ccacattcgttagtaccgctcgaaaagattatcgctcaagtcaaattggaccctagtctc
aaaaactcgttaccacatccatatgaaccagaaatacaaaatagcgtatatcctccatgg
gtttcagaaatgtctaatcccatcgatactggctctgtcgacgaaacagaacctatctgg
gttagtactgaaagtcagttatcggatatgctaaaagaattacaaaacagcaaagaaata
gccgttgatcttgaacaccatgattacagatcatttagagggttcgtctgtctaatgcaa
attagtaatagagaaaaagattggattgttgacaccttggaactccgcgaagagcttgaa
gctttgaatgttgtttttactaatccaaatatcattaaagtttttcatggtgcaactatg
gatatcatttggctgcaaagagatttcgggctttacgttgtaaacttatttgatacatac
tatgctactaaagttttaggatttgagggtcatggtctggcttttctgttacaaaagtat
tgtgattatgatgcagataaaagataccaaatggctgattggagaatccgtcctttgcct
cgggaaatgttaaaatatgctcaatctgatacgcattatttgttatatatttgggatcat
ttacgaaatgaactcatatcaaaatcagctgaaagaaaagaaaatcttatgcaatcagtg
ttcaattccagtaaacaaatatctcttagaaagtatgaacttgagccttatgatcctatt
tatggacttggtactgatggctggagaaatgtacttactaagtttggctcttctaaaata
attggacgggaagctttgatgatttatcgagcactgcacgattggagagattccgtagcc
cgaaaagaagatgaaagtgttcgctatgtgttgccaaatcgtttacttattgcgattgcc
gccagtaaaccggttgaagcggctgatgtgttttcaatttctaagcaattgacaccaatt
gctcgcatgtatgttgaagatatcgttaaagtcgttcaagaagccgaaaagttgtataat
gagcaagtagatcgtgagaaatcccaatttaaagaagttgagaagcaaaatcaaccgcta
gcagttttttccgaatcgaatactttgggtgattacaaagttgactccagtgttttcgag
atttctaaacaaaatagaagtaaactaaagactttgctggcaaatggatctgcgttttgg
attgagggacagtcgcaagatgatttacggaaagctcgtaaagagagactctttatagtg
aaccagaatattcctttttcattaactcttccttgtactcaagggcatgttgaatccgaa
ttgaatgtaaagcagtccactgtaactgaagctgcaaacccgagtctgaatggagagaag
aaacaagagcctatagtcattagggatttagggctgaacaagcaaaaaagggattcttct
aagcttaatcataaagaaccctcaaaccccatagaggagcgaaatgaagatattgaacct
tcggaagcttcaacttcagtgtcaaaaaaacggaagcaaaagaagaaaaagaagaacagc
ggaaaacttactattgaagccgaacatgtttctaatgacagtccaattatcaatgaagca
ccttttgattataaaaatcaaaagaattttattgctgacttagactctgatgtaggaaaa
aataaatttgggaaacggggttttaatcctcttaacaaggtaagtttaccaaagcgaaat
actagggaactcaaaaaaaggaaggtttcagacgggaagagtacatcttattaa
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