Schizosaccharomyces pombe (fission yeast): SPBC20F10.09
Help
Entry
SPBC20F10.09 CDS
T00076
Symbol
lsm5
Name
(RefSeq) putative U6 snRNP-associated protein Lsm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018
RNA degradation
spo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPBC20F10.09 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
SPBC20F10.09 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
SPBC20F10.09 (lsm5)
03041 Spliceosome [BR:
spo03041
]
SPBC20F10.09 (lsm5)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPBC20F10.09 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
SPBC20F10.09 (lsm5)
Spliceosome [BR:
spo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
SPBC20F10.09 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
2540723
NCBI-ProteinID:
NP_596373
PomBase:
SPBC20F10.09
Ensembl:
SPBC20F10.09
UniProt:
O42978
Structure
PDB
LinkDB
All DBs
Position
II:3301282..3302135
Genome browser
AA seq
80 aa
AA seq
DB search
MSMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKH
SEMLLNGNGMCMLIPGGKPE
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgacaattttacctttagaattaattgataaatgcattggatcaaacttatgg
gtgatcatgaaaagtgaacgcgaatttgcggggacacttgttggattcgatgattatgtg
aatattgttctaaaagatgttacagaatatgatactgttaccggcgttaccgaaaaacac
tctgaaatgcttttgaacggaaatgggatgtgcatgttgattcctggtggaaaacccgaa
taa
DBGET
integrated database retrieval system
