Schizosaccharomyces pombe (fission yeast): SPCC31H12.08c
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Entry
SPCC31H12.08c CDS
T00076
Symbol
ccr4
Name
(RefSeq) putative CCR4-Not complex subunit Ccr4
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPCC31H12.08c (ccr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
SPCC31H12.08c (ccr4)
Enzymes [BR:
spo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
SPCC31H12.08c (ccr4)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPCC31H12.08c (ccr4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SPCC31H12.08c (ccr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_1
OprB
Motif
Other DBs
NCBI-GeneID:
2538913
NCBI-ProteinID:
NP_587901
PomBase:
SPCC31H12.08c
Ensembl:
SPCC31H12.08c
UniProt:
O74874
LinkDB
All DBs
Position
III:complement(637435..639685)
Genome browser
AA seq
690 aa
AA seq
DB search
MFNPRYTQGTIYPGAHPGLLTPDHQHAAILSVQNSPALENSNISEHWKQQIALATQSRSF
SSPHQRAHNAAALARSGGPGFSMNYNARTGAFTGGPNAAGLSSLGGKYNTSSTTTTLTTS
TTLNTSSGTTLNSTSKTTTSSVAVDDQKSKSDSKKERRDWTCLDLGGIGLRNVSTDLFKF
SFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMIS
VIPAELGTLFQLKILGIEGNPLQDVYKNQIMESGTAGLIAALRDGCPVGPPPPERGWEKL
VSDDDDDVNDNVSTSVRDLTAADSNKPSTTSKNLKFTIMSYNVLCERYATSTLYGYTPSW
ALSWSYRKDLIMQELGGYNADIICLQEVDVENYDTFFAPQMSLKGYKGVHFPKSRVRTMN
EVERRIVDGCATFFKTSKYVMHEKMVIEYNQAPSLRRQDIKLTSNMYNRVMTKDNISVIT
LLENKENGSRLIVANCHIHWDPQFRDVKVIQVAMLMDEIAQVATKFRNMPSKIPSDQLKD
ERPTYPEYLKIPILICGDFNSVQGSGVYDFLSSGSISQNHEDFMNNDYGEYTVNGRSHAF
NLKSAYGESEALSFTNYTPGFKGAIDHIWYTGNSLEVTGLLKGVDKDYLSGVVGFPNAHF
PSDHICLLAEFKVKQEKTPLPSSKFNNDKK
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatcctaggtatacgcaaggtacaatttatccaggagcgcacccggggctgttg
acgccagaccatcaacatgcagcaatattatctgtacagaattcgccagctttagaaaat
agtaatatttctgaacattggaaacagcaaattgcacttgcaactcagtccaggtccttc
agttcaccacaccaacgagctcataatgctgcggctttagcacgaagtggaggacctggg
ttttcgatgaattacaatgctcggactggagcttttaccggaggccctaatgctgctggc
ttatcctcgttagggggaaagtacaatactagctccactactacaacattgacgacctca
acaacattaaacacttccagtggtactaccttaaacagtacgtcaaaaacaaccacttct
tctgttgcggttgatgaccaaaagtcgaaatctgactctaagaaagagagacgggattgg
acttgtttggaccttggtggtattggtttgagaaatgtgagcactgatttatttaaattc
tcttttttgactgaattatacataaaccataataatcttacccgattaccacctgaaatt
ggcaaactgaagaatttggttattttggatgcctctggaaacagcattaaaactattcca
ccagagcttggtttacttactgagcttagagaagtcctattgtttgataatatgattagt
gtaatacctgccgaactcggtacccttttccaattgaaaattcttggtattgaaggtaat
cctcttcaagacgtttacaagaatcaaatcatggaaagtggtactgcaggtttaattgct
gctttgcgcgatggttgccctgttggccctcctcctcctgagcgtggatgggaaaaactt
gtttccgatgatgatgatgatgttaatgacaatgtttcaacctctgttagagatttaacg
gctgctgattctaacaagccctctacaacatctaagaatctcaagtttactattatgagt
tataatgtgctttgtgaacgttatgctacatccacattgtatggctatactccttcatgg
gcactctcttggtcgtatcgcaaagatttaatcatgcaagaattaggtggttataatgct
gatatcatttgtttgcaagaagttgatgttgagaactatgatactttttttgctccacaa
atgagtttgaaaggttataaaggtgtccacttcccgaaaagtcgcgtacgaactatgaat
gaggttgaacgtcgcatcgtcgatggttgtgctacatttttcaaaacatctaaatatgtc
atgcacgaaaagatggtgatagaatataatcaagcaccatctcttcgtaggcaagacatt
aaactaacgtctaacatgtacaaccgtgttatgactaaagataacattagtgtgattact
cttcttgagaataaggaaaatggatcgcgattgatcgttgcaaattgtcatattcattgg
gatcctcagtttagggatgtcaaggttatacaagttgcaatgctcatggatgagattgca
caggttgcaacaaaattccgtaatatgccttccaagattccttctgaccagttaaaggat
gaaagacctacctatcccgagtatttaaagatccccatcttaatttgtggagattttaat
tccgtccaaggcagtggtgtttatgactttttatcatctggtagcattagccaaaatcat
gaagattttatgaataatgattacggagaatacactgttaatggacgttctcatgcattt
aatttgaaatctgcatatggtgaatctgaagctctctccttcactaactatacacctggc
tttaagggtgccattgatcacatttggtacaccggcaatagcttggaggtaaccggtttg
ttgaaaggagtggataaagattatctttccggcgttgttggtttccctaacgcacacttc
cctagtgatcatatttgcttgctggccgagtttaaagtgaaacaggagaagacaccctta
ccttcatcaaagtttaacaatgataaaaaatga
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