Acidilutibacter cellobiosedens: EQM13_03170
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Entry
EQM13_03170 CDS
T05805
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
spoa
Acidilutibacter cellobiosedens
Pathway
spoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EQM13_03170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spoa03021
]
EQM13_03170
03019 Messenger RNA biogenesis [BR:
spoa03019
]
EQM13_03170
Transcription machinery [BR:
spoa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EQM13_03170
Messenger RNA biogenesis [BR:
spoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EQM13_03170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
Spore_III_AA
NACHT
S1CSD-TOTE-2
Cpn60_TCP1
AAA
AAA_24
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QAT60647
UniProt:
A0A410Q9I6
LinkDB
All DBs
Position
667186..668553
Genome browser
AA seq
455 aa
AA seq
DB search
MTQVDLKGKKILELREIAKNIGIKSPYKYKKEELENLIIQNTASDKIDEDKKNDNIEDKE
EADIKKINKEDFPEKITEEIEKMNDVNLSEGILEVHVDGYGFLRSDNYLSGDNDIYVSPS
QIRRFKLKTGDKILGITRPAKSGEKYKALLYVKSVNGLNPEKSVSRPDFDSLTPVYPTER
IVLETASNELSMRMIDLLAPIGKGQRGMIVSPPKAGKTTLLKKIANAISINHPEIEIIVL
LIDERPEEVTDMKRSVNGDVVYSTFDELPRHHAKVAEIVLERAKRLVEHGKDVVILLDSI
TRLARAYNLTIPATGRTLSGGLDPGALYIPKRFFGAARKLEEGGSLTILATALVETGSRM
DDVIFEEFKGTGNMEIHLDRKLSEKRIFPAIDINKSGTRREELLLSQKELETIWGIRKAL
SNSPIQDVTETLIKDLIQTKSNEDFIDVIRNKMRI
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaagtagatttaaaaggaaaaaaaatattagaattaagagaaatagctaaaaat
atagggattaaaagtccttataaatataaaaaagaggagcttgaaaatttgattatacaa
aacacagcttccgataaaatcgatgaagacaaaaaaaacgacaacattgaagataaagaa
gaagctgatattaaaaagataaataaggaagattttcctgaaaaaataacggaagaaata
gaaaagatgaatgatgtaaatttaagtgaggggatattggaagtccatgttgacggatat
ggatttttaagaagtgataattacctttcgggagataatgatatatacgtatctccatct
caaataagaagattcaaactcaaaaccggtgataaaatattaggaattacaaggcccgca
aagtccggagaaaagtataaagctcttctttatgttaaatctgtaaatggtttaaatccg
gaaaaatcagtttccagaccggattttgattcattaactcctgtatatcctaccgaaaga
attgttcttgaaacagcttcaaatgagctttccatgagaatgatcgatttattggcgcct
ataggaaaggggcagagaggaatgatagtatctcctcctaaggcaggaaagaccactctt
cttaaaaaaattgccaatgcaatttctattaaccatcctgagattgaaataatagttctt
ttaattgatgaaagaccggaggaagtaaccgatatgaaaagatccgtaaacggagatgta
gtatattccacctttgatgaacttcctagacatcatgccaaagtagcagaaatagtcctt
gaaagagcaaaaagattagtggaacatggaaaagacgtcgttattctcttggacagcatt
acaaggcttgccagggcttataacctcactattcccgcaacaggaagaactttatccgga
ggattagatccgggagccctttatattccaaaaagattttttggtgcagcaagaaaatta
gaagaagggggaagtttaactattcttgccactgctcttgtggaaacaggaagcagaatg
gacgatgtaatatttgaagaatttaaaggtacaggaaatatggaaatacatttggacagg
aaactttcggaaaaaagaatatttccggcaatagatataaacaagtcagggacaagaaga
gaggaacttcttttaagtcagaaagaattggagaccatatggggtataagaaaagcatta
agcaattctcccattcaggatgtaactgaaactttaattaaagatttaatacagactaaa
tccaatgaagattttatagatgttataagaaataaaatgcggatttaa
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