Acidilutibacter cellobiosedens: EQM13_11315
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Entry
EQM13_11315 CDS
T05805
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
spoa
Acidilutibacter cellobiosedens
Pathway
spoa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spoa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EQM13_11315 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spoa03021
]
EQM13_11315 (rpoD)
Transcription machinery [BR:
spoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EQM13_11315 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
TAF
Sigma70_r4_2
FTA4
Motif
Other DBs
NCBI-ProteinID:
QAT62133
UniProt:
A0A410QDN9
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All DBs
Position
complement(2348994..2350109)
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AA seq
371 aa
AA seq
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MNHLEKEENKKNGLEAVKKLVRKGKKNGMLTYKEIMDSLEDIDIDTEQIDEIYQRLEDMG
IDIVGDKEADLLLEKDDVGEDAEELKEEDLSLPKGVSVDDPVRMYLKEIGKIPLLTAEEE
IDYAKRMAEGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLMKAVEKFDY
RKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLVQELGRDPLPE
EVAKEMNMDVEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAQAPAEAATYTLLR
EQLVDVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHP
SRSKKLKDFLE
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatttagaaaaggaagaaaacaaaaaaaatggcttggaagctgttaaaaaatta
gtaagaaaaggtaaaaaaaatgggatgctcacttataaggaaataatggatagtttagaa
gatatagatatagatacggagcaaattgatgagatatatcaaagattagaagatatgggg
atagatatagtcggcgataaagaagcagatttgctcttagaaaaggatgatgtaggagaa
gatgctgaagaactgaaagaagaagatttatcccttcccaaaggagttagcgtagatgac
cctgtgagaatgtatttaaaagaaataggtaaaattcctcttttgactgcggaggaggaa
atagattatgctaagagaatggcagaaggagatgaagaagctaagaaaaggctggcagaa
gctaatttgaggcttgtagtaagtatagccaagagatatgtaggaagaggaatgttgttc
cttgatttgatacaagaaggcaatctgggcttaatgaaggcagttgaaaaatttgattat
agaaagggatttaaattcagtacctatgcgacctggtggattcgtcaagctataacacgt
gctattgccgaccaggcaaggactatcaggatacctgttcatatggtagaaaccataaat
aaactggtaagagtttcaagacagttggttcaggaattggggagagatcctcttccagag
gaagtagccaaagaaatgaatatggatgtggaaaaggtaagagaaattatgaaaattgct
caagaacctgtttcattggaaactcctataggggaagaggaagatagccatttaggcgat
tttataccggatgatgaagcacaagcaccagccgaagcggctacttatactcttttaaga
gaacaattggtagatgttttggatactttgacgccgagagagcaaaaagtcttaagattg
agatttgggttagatgatggaagagcaaggactttagaagaagtgggaaaagaatttgac
gttacaagagagagaataagacaaattgaagccaaagctttaagaaaattaagacatccc
agcagaagcaaaaaattgaaggattttttggaataa
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