Acidilutibacter cellobiosedens: EQM13_12940
Help
Entry
EQM13_12940 CDS
T05805
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spoa
Acidilutibacter cellobiosedens
Pathway
spoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EQM13_12940 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spoa03019
]
EQM13_12940 (rnr)
03016 Transfer RNA biogenesis [BR:
spoa03016
]
EQM13_12940 (rnr)
Enzymes [BR:
spoa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EQM13_12940 (rnr)
Messenger RNA biogenesis [BR:
spoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EQM13_12940 (rnr)
Transfer RNA biogenesis [BR:
spoa03016
]
Prokaryotic type
tRNA degradation factors
EQM13_12940 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_RNR_1st
OB_Dis3
CSD
MLD
OB_HELZ2
DUF7367
Malectin_like
S1_RRP5
WHD_MCM
Motif
Other DBs
NCBI-ProteinID:
QAT62404
UniProt:
A0A410QEQ7
LinkDB
All DBs
Position
complement(2686937..2689051)
Genome browser
AA seq
704 aa
AA seq
DB search
MSIRDNIIDLMREKLYKPMLKEELAEVFEIGRKELKVFYKVINSMEKEGIIVKTRSDRYG
LPEKMNLVVGILDGTEKKFGFVVPEEKGEEDIFIPADSINGALNGDKVIVRITRKKDEDK
REEGEIIRILERANKEIVGTFEDNKNFGFVVPDDRRINVDIFIPKAYINGAKTNQKVVVE
VLSWGDYRRSPEGKITEILGYTGEKGTDILSIIKQYKLPEEFPNNVISQAQAIPQEIEER
EIGRRLDLREKNIFTIDGEDAKDFDDAVSVEKMNNGNFLLGVHIADVTHYVKENSPLDKE
ALKRGTSVYLIDRVIPMLPLELSNGICSLNPNVDRLTLSVFMEIDNNGNIVDHKIQESVI
RSKRRLVYDDISDLLEKGEEHIVREYKDIYEDLKNMEKLCYILRDKRELRGSIDFDFPEA
KIILDDDGKPVDIKKDDRRIANRIIEEFMLACNETVAEDMTWADIPFVYRIHENPDSEKI
GDFNKFIHNFGYNLKGNQEIHPKELQELLKKIEGKKEEALISNLMLRSLKKARYSNKAEG
HFGLAAKYYCHFTSPIRRYPDLQIHRIIKSYINGRLTPDKIQYLEKRLPMVADQSSGMEK
IADEAERDVDDLKKAEYMSKRIGSVYEGMVSSLTHFGMFVQLDNTIEGLIHFSNMVDDYY
YFDDDKYCIVGERTHKIYRIGDMVKIKVIGADVVRRSVDFVLTD
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgagtataagagataatattatagatctgatgagagaaaaactgtataaacccatgctt
aaggaagaacttgctgaagtttttgaaatagggaggaaggaactaaaagttttttataaa
gtaataaacagcatggaaaaggaaggaataatagttaaaacaagaagcgacaggtacgga
cttccggaaaagatgaatcttgtagtagggatacttgacggaacggaaaagaaatttggc
tttgtagtgcctgaagagaaaggcgaagaggatatatttatacctgcagacagtattaat
ggagctctcaacggagataaagtaattgtaagaataacaagaaaaaaagatgaagataag
agagaagaaggagagataataagaatattagaaagagccaataaggagattgtcggaaca
tttgaagacaataaaaattttggctttgttgttcccgatgatcgaagaataaatgtggat
atatttattcccaaggcctatatcaacggtgctaaaacaaaccaaaaggtagttgtggaa
gtactcagctggggtgattacagaagaagtcccgaaggaaaaataacggaaatattagga
tatacgggagaaaagggaacggatatcctttctataattaaacaatataaattaccggaa
gaatttccgaataacgtaatatctcaggcccaagctatccctcaagaaattgaagaaaga
gagataggaagaaggctggatttaagagagaaaaatatttttacaatagacggagaagat
gcaaaggattttgatgatgcggtatccgtagagaagatgaataatggaaattttttgctt
ggagttcatattgcggatgtaactcattatgtaaaggagaattctcctttggataaggaa
gcgttgaaacggggaacaagcgtgtacttaattgacagggtaattcctatgcttccgttg
gaactttccaatggaatatgcagtttgaatccgaatgttgataggcttactttaagtgta
tttatggaaatagataataatggcaacatagttgatcataaaatacaggagagtgttata
agaagcaagagaagattagtttatgatgatatttcggatttgctggaaaaaggtgaagaa
catatagtcagggagtataaagatatatatgaagatttaaagaacatggaaaagttatgc
tacatactaagagataagagagaactccgaggaagtatagattttgattttccagaagca
aagataatattagacgatgatggaaagcctgttgatataaaaaaagatgatagaagaata
gctaatagaataatagaggagtttatgcttgcctgcaatgaaaccgtagcagaagatatg
acatgggcagatattccctttgtgtacagaatacatgaaaatccggattcggaaaagata
ggtgattttaataaattcatacacaattttggatacaatttaaagggcaatcaagaaatt
catccaaaagaacttcaggaattgttaaaaaaaattgaaggcaaaaaagaggaagcatta
attagcaatttgatgttgagatccctgaaaaaagccagatatagcaacaaagccgaagga
cattttggtttggctgcaaaatattattgccattttacttcccctataaggagatacccc
gatttacagattcatagaataataaaaagttatataaacggaagattgacccctgacaaa
attcaatatttagaaaaaaggcttccgatggttgcggatcaatcctcgggaatggaaaaa
atagctgatgaagcggaaagggatgtagatgatttaaagaaagccgaatatatgtctaaa
agaataggaagtgtttatgagggaatggtttcatctctcacccactttggaatgtttgtt
caattggataatactattgaaggtttaattcattttagcaatatggtagatgactattat
tattttgatgatgataaatattgtattgtaggggaaagaactcataaaatttatagaatc
ggagatatggtaaaaattaaggtaattggtgcagatgtcgtaagaaggtcagtagatttt
gttttaacagattaa
DBGET
integrated database retrieval system
