Acidilutibacter cellobiosedens: EQM13_16415
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Entry
EQM13_16415 CDS
T05805
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
spoa
Acidilutibacter cellobiosedens
Brite
KEGG Orthology (KO) [BR:
spoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spoa03009
]
EQM13_16415 (rlmD)
Enzymes [BR:
spoa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EQM13_16415 (rlmD)
Ribosome biogenesis [BR:
spoa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EQM13_16415 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
MTS
Methyltransf_31
Cons_hypoth95
Methyltransf_15
PrmA
Methyltransf_25
N6_N4_Mtase
TRM5-TYW2_MTfase
Ubie_methyltran
PCMT
Methyltransf_11
N6_Mtase
UPF0020
Methyltransf_4
Methyltrans_SAM
AviRa
RrnaAD
Methyltransf_18
Methyltransf_32
Methyltransf_12
TPMT
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
QAT63500
UniProt:
A0A410QHR3
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All DBs
Position
complement(3391409..3392845)
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AA seq
478 aa
AA seq
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MKIIKIRILHYVGYFILKRIIRTGGKVKRKKEIIEINIDKVIFPNKGIGNYNGRKVVVKG
GIEGQQVRVLVKRKRKSHIDGNILGVVERAPIEKEAKCPHFKECGGCYYQTLSYEDELKI
KTEGVKDLFDSSNIEMGEFLGIEESPQIKGYKNKMEYTFGDAFKDGDLVLGLHKRGRFYE
ISEVENCTIADKDFTTILQETSKYFREMNIPHYKKKNHIGVLRHLAIRKALSTGEILVNL
VTSSQQELELNGFAEKLKNIKLDGHIVGFLHTTNDRVSDSIIPEKVEIIYGRDYITEELL
GYKFKISPFSFFQTNTFGAERLYTTAREFAGDLRDKTIFDLYCGTGTISIIMSSSAKKVV
GIEIEEEAVEMAKENLMLNEINNTEFICGDVLNQVDNLNERPNLIIIDPPRQGIHPKAIN
KIIDFNPEEFIYISCNPVTLVRDLRIFEDRNYRVKKVKIIDMFPRAGHVETVVLMSRK
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattattaagatcagaattctacattatgttggatacttcatactaaaaagaatt
attagaacgggtggtaaagtgaaaagaaaaaaagagattatagagataaatatagataaa
gttatatttcccaataaagggataggaaattataacgggagaaaagtagttgttaagggc
ggaatagaaggccagcaggtaagagtactggttaaacgaaagagaaaaagccatattgat
gggaatatattgggggtagttgaaagggccccaattgaaaaggaagccaaatgtcctcat
tttaaggaatgtggaggctgctactatcaaactctaagctatgaggatgaacttaagata
aagactgaaggagtcaaggatttgtttgattcttccaatattgaaatgggagaatttctt
ggaatagaagaaagccctcaaataaagggatataaaaacaaaatggagtatacctttggc
gatgcttttaaagatggggatttggttttgggcctccataaaagaggaaggttttatgaa
atatcggaagtggagaattgtactattgccgataaagatttcactacaattcttcaagaa
acatcgaaatatttcagagaaatgaatattccccattataagaagaaaaaccatattgga
gtattaagacatcttgcaatcagaaaagctctttctacaggagagatattggtgaacttg
gtgaccagttctcaacaggaattggaattgaacggctttgcagaaaaattgaaaaatata
aagctggatggccatatagtgggatttcttcacacgactaatgaccgtgtttctgattcc
ataattccggagaaggtagaaatcatatatggaagagattatataacagaagaactttta
ggatataaatttaaaatatctcctttttctttttttcagaccaatacttttggtgcagaa
aggctttatacaacggcaagagaatttgcgggagacttaagagataagacaatatttgat
ctatattgtggaacaggaactatttccatcattatgtcttcttcagcaaaaaaggttgta
ggaattgaaatagaagaagaagccgtagaaatggcaaaagaaaatttgatgctaaatgaa
ataaataatacggaatttatttgtggggacgtattgaaccaggtagataatcttaatgag
aggccgaatttaataataatagatcctccgagacagggaatacaccctaaggctattaac
aagataatagactttaatcccgaagaatttatatacatatcctgtaatcccgtgacctta
gtaagagatttgagaatatttgaagacaggaactatagggtaaagaaagttaagattata
gacatgttcccgagagcggggcacgttgagacggttgtattgatgtctagaaagtga
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