Streptococcus porcinus: NCTC10925_00579
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Entry
NCTC10925_00579 CDS
T07290
Symbol
cshA
Name
(GenBank) DEAD box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spoc
Streptococcus porcinus
Pathway
spoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10925_00579 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spoc03019
]
NCTC10925_00579 (cshA)
03009 Ribosome biogenesis [BR:
spoc03009
]
NCTC10925_00579 (cshA)
Enzymes [BR:
spoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC10925_00579 (cshA)
Messenger RNA biogenesis [BR:
spoc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC10925_00579 (cshA)
Ribosome biogenesis [BR:
spoc03009
]
Prokaryotic type
rRNA helicases
NCTC10925_00579 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NAT10_TcmA_helicase
DUF1924
Motif
Other DBs
NCBI-ProteinID:
VTT43945
LinkDB
All DBs
Position
1:561849..563465
Genome browser
AA seq
538 aa
AA seq
DB search
MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKIRTDENIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF
SATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLMDVDQPE
LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILVATDVAA
RGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMIENLTKK
QMKPLKPATAEEAFQAKKKVALKKIERDFADETIRSNFEKFKGDAIQLASEFTPEELALY
ILSLTVQDPADQPEVEIAREKPLPFKYVGGGHGGGKKSSKGGRGRSSRDGERRGGYRGKR
DDRRGGERRDDRRKDKRDENGGSRDFKRKPKRQAKEFFNKDKKSTGKDSGFVIRHKGE
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaattaaacttatctgaagacatccaatcagctgttgtaacagcaggt
tttgaaaaagcatctcctatccaagagatgactattccattagctttagaaggaaaagat
gtcattggtcaagcacaaacaggaactggtaaaacagctgcttttggtcttccaaccttg
aataagatccgtacggatgaaaatatcatacaagcacttgttattgccccaacgcgtgaa
cttgctgtccaaagtcaggaagaactctttcgttttggtcgtgataaaggcgttaaagtt
cgctccgtctatggtggtgcaagtattgataaacaaattaaagcccttaaatcaggagct
catattgttgttggtacacccggtcgtttacttgacttaattaaacgtaaagcattaaaa
cttgaccatgttgaaacccttattttggatgaagctgacgaaatgcttaatatgggcttc
ttagaagatattgaagccattattagccgtgtccctgaggaacgccaaaccttgctattt
tcagcaactatgccagcacctattaaacaaattggtgttaagtttatgaaaaatccagag
catgttcaaattaaaaataaagaacttacaaatgtaaatgttgaacaatattatgttcgt
gttaaagaacaagaaaaatttgataccatgacacgtttgatggacgttgaccaaccagaa
ttatcaattgtttttggtcggacaaagcgtcgcgtcgatgaaattactcgcggtttgaaa
ttacgaggtttccgtgctgaaggtattcatggtgaccttgatcagaataaacgtttacgt
gttatccgtgattttaagggagatcaagttgatatcttagtagcaacagacgttgctgcg
cgtggtcttgacatttcaaacgtaacgcatgtgtataactacgatatcacacaagatcca
gagtcttatgttcaccgtatcggtcgtacaggtcgtgctggtaaatcaggagaatcaatc
acttttgtttcaccaaatgaaatgggttacttaagcatgattgaaaacttgactaagaaa
caaatgaaaccgctgaaaccagcaacagctgaagaagcctttcaagcaaagaaaaaagtg
gcacttaaaaagattgagcgtgattttgcagatgaaacaattcgctcaaactttgaaaag
tttaaaggtgatgctattcaattagcctctgaattcacacctgaagaattagcactttat
attttgagtttaaccgttcaagatccggcagatcaaccagaagttgaaattgcacgtgaa
aaaccacttccattcaaatacgttggtggtggtcacgggggcggtaaaaaatcttctaaa
ggtggtcgaggtagaagtagccgtgatggtgaacgccgtggtggttaccgagggaaacgt
gatgaccgtcgtggaggagaaagacgtgatgaccgtcgtaaagacaaacgtgatgagaat
ggcggaagtcgtgactttaagcgtaagccaaaacgtcaggcaaaagaattctttaacaaa
gataaaaagtctacaggtaaggattctggattcgtcatccgtcataaaggtgaataa
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