Streptococcus porcinus: NCTC10925_00765
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Entry
NCTC10925_00765 CDS
T07290
Symbol
rnjB
Name
(GenBank) metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spoc
Streptococcus porcinus
Pathway
spoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10925_00765 (rnjB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spoc03019
]
NCTC10925_00765 (rnjB)
Messenger RNA biogenesis [BR:
spoc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC10925_00765 (rnjB)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
VTT44530
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Position
1:767913..769574
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AA seq
553 aa
AA seq
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MSDIKIIALGGVREYGKNFYLVEINNSIFILDSGLKYPENEQLGVDLVIPNLDYLIENKD
KVQGVFLSHGHADAIGALPYLLAEVPVPVFGSELTIELAKLFVKSNNATKKFNNFHIVDS
ETEIEFRDGLVSFFSTTHSIPETLGVVIGTDRGNIVYTGDFKFDQAAREGYQTDLARLAE
IGKEGVLALLSASANATSVVQTASETEVGDEMNQVIGDAEGRVIIAAVASNLVRIQQVFD
SAAASGRRVVLTGSDVENVVRTAIRLKKLTLIDEKLLIKPKDMSKYEDHELIVLEAGRMG
EPIVSLQKMAIGRHRFVNIKKGDLVYIVTTPNVAKEAMVARVENLIYKAGGSVNLITQNL
RVSGHANGRDLQLMLNLIKPKYLFPIQGEYRDLAAHAELAEEIGLFPENIYIVKRGDIMV
LNQEGFLHEGAIPASDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVVITVSKREKRIISK
AKVNTRGFVYVKKSRDILRESAELVNTTVGNYLQQDNFDWGELKGSVRDELSKFLFEQTK
RRPAILPVVMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatataaaaattatcgccttggggggagttcgtgaatatggaaagaacttctac
ttggtagaaataaacaattcgatttttatcttagattcgggcttgaaatacccagagaac
gagcaattgggagtggatcttgtcatcccaaatttagattaccttattgaaaataaagat
aaggtacaaggtgtattcttaagccacggccatgccgatgccattggagccttgccttac
ctattagcagaagtgcctgttcctgtttttggttctgagttaaccatagaactagccaag
ctctttgttaaaagtaacaatgctactaaaaaatttaataactttcatattgttgatagt
gaaacagagattgaattccgtgatggtttggtttctttctttagcactacccactcaatc
ccagaaaccttgggagtagttatcggcactgaccgtggaaatattgtctacacaggtgat
tttaaattcgaccaggcagcgcgtgaaggttaccaaacagacctagctcgtctagctgag
attggtaaagaaggcgttcttgctttactatcagcatctgctaacgccacttcagttgtg
caaacagctagtgaaactgaagttggtgatgagatgaaccaagttattggtgacgcagag
ggtcgtgtgattattgcagcagttgcttcaaacttagtccgaattcagcaggtttttgac
tcagcagcagcttctggtagacgcgtggttctgactggtagtgatgtggaaaatgttgtg
cgcacggctatccgtctgaaaaaattaacactgattgacgaaaaattgttaataaaacca
aaagacatgtctaaatatgaggatcatgaactcattgtccttgaagcaggacgaatgggc
gagccaattgtgagcttgcaaaaaatggcaataggccgtcaccgctttgttaacattaaa
aaaggtgatttggtctatatcgtcaccacaccaaatgttgctaaagaagcgatggttgcg
cgtgttgaaaacctcatttataaagcaggtggctcagtcaacctaattactcaaaattta
cgagtttctggtcatgctaatggacgtgacttgcagttaatgcttaacttaatcaaaccg
aaatacttgttcccgattcaaggtgagtaccgtgatttagcagcccatgctgagttagca
gaagagattggactttttccagaaaatatctacattgttaaacgtggtgatatcatggtt
ctcaaccaagagggcttcttgcatgaaggtgcaatccctgctagcgatgttatgattgat
ggtaatgctatcggagatgtcggcaatattgttctgcgtgaccgtaaagttttatcagaa
gatgggatttttattgttgttatcactgttagcaagcgtgaaaagagaatcatttcaaaa
gctaaggtcaatactcgtggctttgtttacgttaaaaagagccgtgatattctgcgagaa
agtgcagaattggtcaataccacagtgggtaattacctgcaacaagacaattttgattgg
ggcgaactcaagggatctgtccgcgatgagttgtctaaattcttatttgaacaaacaaaa
cgtcgtccagctattcttccagtagtcatggaagtccgctag
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