Streptomyces poriferorum: P8A21_17070
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Entry
P8A21_17070 CDS
T10937
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spof Streptomyces poriferorum
Brite
KEGG Orthology (KO) [BR:
spof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spof03016
]
P8A21_17070
Enzymes [BR:
spof01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
P8A21_17070
Transfer RNA biogenesis [BR:
spof03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
P8A21_17070
Prokaryotic type
tRNA splicing ligases
P8A21_17070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WLQ49101
LinkDB
All DBs
Position
complement(3995672..3996865)
Genome browser
AA seq
397 aa
AA seq
DB search
MSYVEVPGAKVPIRMWADPASVEDVAMQQLRNVATLPWIKGLAVMPDVHFGKGATVGSVI
AMHGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSPLRSKIEQAIPVGRGMHSDPVDPD
RLHDLAAPRWDDFWARFDGVAEAVKFRQERATKQMGTLGGGNHFIEVCLDESGSVWLMLH
SGSRNIGNELADFHIGRAQQLPHNQDLVDRDLAVFLADTPQMQDYRNDLFWAQEYAKLNR
AVMMALFQDVVRKEFKKAKVTFEPVISCHHNYVSEERYDGMDLLVTRKGAIRAGSGDFGI
IPGSMGTGSYIVKGLGNEKSFNSASHGAGRKMSRNAAKKRFSTKDLEDQTRGVECRKDSG
VVDEIPGAYKSIEKVIDQQRDLVEVVAKLKQIICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtagaggtgccgggagcgaaggtccccatccgtatgtgggccgatccggct
tcggtcgaggacgtcgccatgcagcagctgcgcaacgtcgccaccctgccatggatcaag
ggtctggccgtgatgccggacgtccacttcggcaagggcgccacggtcggctcggtgatc
gcgatgcacggagcggtctgcccggcggcggtgggcgtggacatcggctgcggaatgtcc
gcggtgaagacatcgctgaccgccaacgacctgcccggggacctgtccccgctccggtcg
aagatcgagcaggcgattccggtgggccggggtatgcacagcgacccggtggacccggac
cggctgcacgacctcgcggcgccgcgctgggacgacttctgggcgcggttcgacggggtg
gccgaagcggtcaaattccgtcaggaacgtgccacaaagcagatgggaacgctcggcggg
ggaaatcacttcattgaagtctgtctcgatgagtcgggttcggtctggctgatgctgcac
tccgggtcccggaacatcggcaacgagttggccgacttccacatcggccgggcacagcag
ctgccgcacaaccaggacctggtagaccgtgacctggcggtcttcctcgcggacaccccg
cagatgcaggactaccgcaacgacctcttctgggcgcaggagtacgcgaagctcaaccgt
gcggtcatgatggcgctcttccaggacgtggtccgcaaggagttcaagaaggccaaggtg
accttcgaaccggtcatctcctgtcaccacaactacgtgtcggaggagcggtacgacggc
atggacctgctggtcacccgcaagggtgccatccgggccggctccggggacttcgggatc
atcccgggctccatgggcaccggctcgtacatcgtgaagggcctcggcaacgagaagtcc
ttcaactcggcctcgcacggcgcgggccggaagatgagccggaacgccgccaagaagcgc
ttctccacgaaggacctggaggaccagacgcggggtgtggagtgccgcaaggactccggt
gtcgtcgatgagatcccgggcgcgtacaagtcgatcgagaaggtcatcgaccagcagcgc
gacctggtggaggtcgtcgcgaagctgaagcagatcatctgcgtgaagggctga
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