Streptomyces poriferorum: P8A21_29590
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Entry
P8A21_29590 CDS
T10937
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spof Streptomyces poriferorum
Pathway
spof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P8A21_29590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spof03019
]
P8A21_29590
Messenger RNA biogenesis [BR:
spof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P8A21_29590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WLQ51382
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Position
6765249..6766934
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AA seq
561 aa
AA seq
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MSHPHPELGTPPKLPKGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTTIRDRLDDVEGIVLTHGHEDHIGGVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVKEGQRERIGVFDCEFIAVNHSIPDALAVAIRTPAGMAVATGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDIQNVLRTVFANAQKRIIVAS
FASHVHRIQQILDTAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPKD
HIVIAEDGVVVDLIDGKAKIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGDEGIISVFI
VVDSSSGKIVGAPHIQARGSGIDDSAFSAVVPKIEEALNKSAQDGVMEPHQLQQLVRRTV
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggcaccccgccgaagctcccgaagggcggcctgcgg
gtcaccccgctgggtggcctcggcgaaatcggccgcaacatgacggtcttcgagtacggc
ggccgcctgctcatcgtcgactgcggcgtcctcttccccgaagaggagcagccgggaatc
gacctgatccttccggacttcaccaccatccgggaccgtctcgacgacgtcgagggcatc
gtcctcacgcacggacacgaggaccacatcggtggtgtcccgtatctgctgcgcctgaag
ccggacatcccgctcatcggctccaagctgaccctcgcgctcatcgaggccaagctccag
gagcaccgcatccgtccgtacacccttgaggtcaaggaggggcagcgcgagcgcatcgga
gtcttcgactgcgagttcatcgcggtcaaccactccatcccggacgctctcgcggtcgcc
attcgcacccctgcgggcatggcggtcgccaccggcgacttcaagatggaccagctgccg
ctggacggccggctcaccgacctgcacgccttcgcccggctgagcgaggaaggcatcgac
cttctgctctccgactccacgaatgcggaggtccccggcttcgtaccgccggagcgcgac
atccagaacgtgctgcgcacggtcttcgccaatgcgcagaagcgcatcatcgtggcgagc
ttcgccagccacgtgcaccgcatccagcagatcctcgacacggcccacgagtacggccgc
agggtcgccttcgtcggacgttcgatggtccggaacatgggtatcgcccgtgacctcgga
tatctgaaggttcccgcgggactggtcgtcgacgtcaagaccctcgacgacctgccggac
gacgaggtggtgctcgtctgcacgggctcgcagggtgagccgatggcggccctgtcccgg
atggccaaccgtgaccaccagatccgcatcgtccagggcgacaccgtcatcctggcctcg
tcgctgatcccgggtaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccacgtctccggtcacgcctcggcc
ggtgagctgttgtacttctacaacatctgcaagccgaagaacctgatgccggtccacggc
gaatggcgccacctccgggccaacgccgaactgggcgccctcaccggcgttccgaaggac
cacatcgtcatcgccgaggacggcgtggtcgtcgacctgatcgacggcaaggccaagatc
gtcggcaaggtccaggccggctacgtgtacgtcgacggtctctcggtgggcgatgtcacc
gagacctccctgaaggaccgccgcatcctcggcgacgagggcatcatctcggtcttcatc
gtggtggacagctcctccggcaagatcgtgggcgccccccacatccaggcccgcgggtcg
ggcatcgacgactcggcgttcagcgcggtcgtaccgaagatcgaagaggccctcaacaag
tcggcgcaggacggcgtcatggagccgcaccagctccagcagctcgtccgccgcacggtg
ggcaagtgggtctccgacacctaccgccggcgcccgatgatccttcccgtcgtggtcgag
gtctga
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