Sphingopyxis sp. OPL5: EEB18_001950
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Entry
EEB18_001950 CDS
T10726
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spog Sphingopyxis sp. OPL5
Pathway
spog03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EEB18_001950 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spog03400
]
EEB18_001950 (ligD)
Enzymes [BR:
spog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EEB18_001950 (ligD)
DNA repair and recombination proteins [BR:
spog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EEB18_001950 (ligD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QNO27773
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All DBs
Position
406900..408783
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AA seq
627 aa
AA seq
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MARKTAAPSPADRAPSSKRGERKAAAPPPFRPVQLATLVDSVPAGRGWVHEMKYDGYRLL
IAVGGGEARAYTRSGLDWSERFAPLLAEAVKLKVDSALIDGEAVVLDAEGRSRFQSLQNA
LKATPDSIDYFAFDLLELDGEDLTPLPLLDRKAHLAKILPKASRHIRFSDHIEGSGEKLL
ESFCAAGLEGVISKKADARYVGSRAGSWLKAKCIKRQEFVIVGWTPSDKSRAFRSLMLGV
HEKGALRYAGKVGTGFDTEELFRLQAMMKPLERKEPTVKAPRTETRGAHWIEPKLVAEIA
FTEMTNEGTLRHPSYLGLREDKKPEAVVVESEEKVAVATSIFPVPISNSDRVIFPEAGLT
KGELAEYYAALAPIMLLWAGSRPISLVRCPQGRAKKCFFQKHDAGSFGDSVKQVAIEEKD
GDNQPYLYMDTPEGLMTCVQMGTIEFHGWGARIEDVEKADRLVFDLDPDVGLDFEAVRSA
AFQFRDILKQMGLETFPMLTGGKGVHVIAPLVPRAEWPEVKDFAHRLARAVAQMDPDRFT
AALPKAQRKGRIFVDYLRNQRGATAVMPYSARAREGAPVAAPISWKEMETIDKPSHFRIT
DAKELLKRAGLKALQGWGRADQTLPDL
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggccagaaagaccgccgcaccgagccctgcagaccgcgccccctcttcgaagcgcggc
gaacgaaaggctgcggctcccccgccctttcgtccggtccagctggcgacgctcgtcgac
agcgttcccgccggcaggggctgggttcacgagatgaaatatgacggctaccgcctgctg
atcgcggtcggcggcggcgaggcccgcgcctatacgcgctcgggtctcgactggtcggag
cgcttcgcgccgctcctcgccgaggccgtaaagttgaaggtggacagtgcgttgatcgac
ggcgaagcggtcgtgctcgatgctgaaggccgctcgcgcttccagtcgttgcaaaacgcc
ctcaaggccaccccggacagcatcgactatttcgcgttcgatctcctcgagctcgacggc
gaggatctgacccccctccccctcctcgaccgcaaggcgcatctcgccaaaatccttccc
aaggcctccaggcatatccgcttctcggaccatatcgagggcagcggcgagaagctgctc
gaaagcttctgcgccgcaggtctcgaaggagtcatctcgaagaaggccgacgcgcgctat
gtcggctcgcgcgcgggaagctggctcaaggcgaagtgcatcaagcggcaggagttcgtc
atcgtcggctggacgccttccgacaagtcgcgcgcgttccgctcgctcatgctcggcgtg
catgagaagggcgcgctgcgctacgcgggcaaggtcgggaccggattcgataccgaggag
ctcttccgcctccaggcgatgatgaagccgctcgaacgaaaggagccgacggtgaaggcg
ccccgcaccgagacgcgcggcgcgcactggatcgagccgaagctcgtcgccgagatcgct
tttaccgagatgacaaacgagggcacgctccgccacccgagctatctcggacttcgcgaa
gacaagaagccggaggccgtggtcgtagagagcgaagaaaaggttgcggtggcgacgagc
atcttccccgttccgatcagcaactccgaccgcgtcatctttcccgaggcggggctcacc
aagggcgagcttgcagaatattatgccgcactcgcgccgatcatgctgctgtgggcgggt
tcgcgcccgatcagcctcgtgcgctgtccgcagggccgcgccaagaaatgcttcttccag
aaacatgatgccggaagcttcggcgattcggtgaagcaggtcgcgatcgaggagaaggat
ggcgacaaccagccctatctctacatggacacgcccgagggcctgatgacctgcgtccag
atgggcacgatcgaattccatggctggggcgcgcgcatcgaggatgtcgagaaggccgat
cggctcgtcttcgatctcgatcccgacgtcggtctcgatttcgaggcggtgcgcagcgcc
gccttccagttccgcgacatcctgaagcagatgggcctcgagaccttcccgatgctaacc
ggcggcaagggcgtccatgtgatcgccccgctcgtgccgcgcgccgaatggcccgaggtc
aaggacttcgcgcaccggctcgcccgcgccgtcgcgcaaatggatcccgaccgcttcacc
gccgccctccccaaggcgcagcgcaagggccggatcttcgtcgattatctccgcaaccag
cgcggcgcgactgcggtgatgccctattcggcgcgcgcccgcgagggcgcgccggtcgcc
gcgcccatcagctggaaggaaatggagacgatcgacaagccgtcgcatttccgcatcacc
gacgcgaaggagcttctgaagcgcgccggcctcaaggccctgcaaggctggggccgcgcc
gaccagacgctgcccgacctgtga
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