Sphingopyxis sp. OPL5: EEB18_003735
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Entry
EEB18_003735 CDS
T10726
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
spog Sphingopyxis sp. OPL5
Brite
KEGG Orthology (KO) [BR:
spog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spog03016
]
EEB18_003735 (rnd)
Enzymes [BR:
spog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
EEB18_003735 (rnd)
Transfer RNA biogenesis [BR:
spog03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EEB18_003735 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QNO28087
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All DBs
Position
764393..765619
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AA seq
408 aa
AA seq
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MQVHPLIETSAALVEFCDLIKNSDFIAVDTEFMRENTFWPELCLIQVANSEHAAGIDPLA
KDMDLKPLLDLMVDNEDMLKVFHAGGQDVEIIFNLTGKTPHPIFDTQIGQMALGQAEQVG
YSNLVEAWLGIQLDKGARFTDWSRRPLDKRQIDYAIGDVTHLAKIFPMMLKKLVKTGRGH
WLDEEMEKLADPSNYSVDPDQAWHRIKIPSRKPDVLGRLQSLAAWREREARSKNLPRGRI
VKDETLADLAAHPPKDQDGLGRVRGLSATWRSNDIGGRLMDALDNAKPLDRDDMPDRAPR
GPGLGKEGVLVADLLKLLLKIRGRELNVAARLIARSDELEALAAGRRDNIPMLQGWRYDV
FGHAALDLVEGRMGFAVQHGKLVMSKIEAPTPIDAAPIDAAPIDATEA
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtccatccgctcatcgaaaccagcgccgcgctcgtcgaattctgtgatctcatc
aagaacagcgatttcatcgcggtcgacaccgagttcatgcgcgagaacaccttctggccc
gaactctgcctgatccaggtcgccaacagcgagcacgccgcaggcatcgacccgttggca
aaggacatggacctgaaaccgctgcttgatctgatggtcgacaacgaggacatgctgaag
gtcttccacgccggcgggcaggatgtcgaaatcatcttcaacctgaccggcaagaccccg
cacccgatcttcgacacccagatcgggcagatggcgctcggtcaggccgaacaggtcggc
tattcgaacctcgtcgaggcgtggctgggtatccagctcgacaagggcgcgcgctttacc
gactggagccgccgcccgctcgacaagcgccagatcgactatgcgatcggcgacgtcacc
catttggccaaaatttttccgatgatgctcaaaaagctcgtcaagaccgggcgcggccat
tggctcgacgaggagatggaaaagctagccgatccgtcgaactacagcgtcgaccccgat
caggcgtggcaccggatcaagattccgtcgcgcaaacccgacgtgctcggccgcttgcaa
tcgctggcggcgtggcgcgagcgcgaggcgcgttcgaagaatctgccgcgcggccgaatc
gtcaaggacgaaacgctcgccgacctcgccgcgcatccgccgaaggatcaggacggtctg
ggccgcgtacgcgggctgtcagcgacctggcgctcgaacgacatcggcgggcgactgatg
gatgcactcgacaacgccaagccgctcgaccgcgacgacatgcccgaccgcgccccgcgc
gggccggggctgggcaaggaaggcgtgctcgtcgccgatttgctcaagctgctgctcaag
attcgcggacgcgagcttaatgtcgcggcgcggctgatcgcgcgcagcgacgaactcgag
gcgcttgctgccgggcgccgcgacaatattccgatgctgcagggctggcgctacgacgtg
ttcggccatgccgcgctcgacctagtcgaggggcggatgggctttgccgtccagcacggc
aagctggtgatgagcaagatcgaggccccgaccccgatcgacgcggccccgatcgacgcg
gccccgatcgacgcgaccgaagcttaa
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