Sphingopyxis sp. OPL5: EEB18_004615
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Entry
EEB18_004615 CDS
T10726
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
spog Sphingopyxis sp. OPL5
Brite
KEGG Orthology (KO) [BR:
spog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spog03009
]
EEB18_004615 (rimO)
Enzymes [BR:
spog01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
EEB18_004615 (rimO)
Ribosome biogenesis [BR:
spog03009
]
Prokaryotic type
ribosomal protein modification factors
EEB18_004615 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
Motif
Other DBs
NCBI-ProteinID:
QNO28244
LinkDB
All DBs
Position
942673..944043
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AA seq
456 aa
AA seq
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MATKTLPSQPKVGMVSLGCPKALVDSERILTKLRADGYGLSPDYAGADVVLVNTCGFLDS
AKEESLEAIGEAMAENGRVIVTGCMGNEADVIRARFPNVLAVTGAHQYEQVVDAVHEAAP
PTQGPFVDLVPEGGLKLTPRHYSYLKISEGCNHSCSFCIIPDLRGKLVSRRIDAVLREAE
KLVAAGTKELLVISQDTSAYGVDTRHDPRQWKGREVRAHMTDLARELGQLQTSEGRAPWV
RLHYVYPYPHVDAVIPLMAEGLLTPYLDIPFQHASPSVLKRMKRPANEAKVLERLKNWRN
IAPDIAIRSSFVVGFPGETEADFQYLLDWLDEAQLDRVGAFRFEPVAGAQANALDDQVPE
ELKEERYQRIMEKTATISAAKLEAKIGRTLPVIIDEVGEADEDGSIGATGRSQADAPEID
GHVYLRDVAATLKAGDIVDVTVEDADEHDLFGVVAG
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaaaccctcccctcccagccgaaggtcggcatggtctcgctcggctgtccg
aaagcgctcgtcgacagcgaacggattctgacgaaactgcgcgccgacggctatggcttg
tcgcccgactatgccggcgccgacgtcgtcctcgtcaacacctgcggcttccttgattcc
gccaaggaagaaagcctcgaggcgatcggcgaggcgatggccgagaatggccgcgtcatc
gtcaccggctgcatgggcaacgaggccgacgtcatccgcgcccgcttccccaacgtcctc
gcggtcaccggcgcgcatcaatatgaacaggtcgtcgacgccgtccacgaagccgcgccg
ccgacccaaggccccttcgtcgacctcgtccccgagggcgggctgaaactcaccccgcgc
cactacagctatctcaagatttcggaaggctgcaaccacagctgctccttctgcatcatc
cccgatctacgcggcaaactggtcagccgccgcatcgacgccgtcctccgcgaagccgaa
aagctcgtcgccgcggggaccaaggaactgctggtgatcagccaggacacctcggcctat
ggcgtcgatacccgccacgatccgcgccagtggaagggccgcgaagtccgcgcccatatg
accgacctcgcgcgcgaactcggccagcttcagaccagcgaaggccgcgccccatgggtg
cgcctccactatgtctatccctacccccacgtcgacgcggtcatcccgttgatggccgag
gggctgctgaccccctatctcgacatccccttccagcacgccagccccagcgtcctcaag
cgcatgaagcgccccgccaacgaagcgaaggtgctcgaacgcctcaagaactggcgcaac
atcgctcccgacatcgcgatccgctcgagcttcgtcgtcggcttccccggcgagaccgag
gccgatttccaatatctgctcgactggctcgacgaagcccagctcgaccgcgtcggcgcc
ttccgcttcgaacccgtcgccggcgcgcaggcgaacgcgctcgacgatcaggtgcccgaa
gagctcaaggaagagcgctaccaacgcatcatggaaaaaaccgccacgatcagcgccgcg
aaactcgaagccaagatcggccgcacgctgcccgtgattatcgacgaagtcggcgaggcg
gacgaggacggcagcatcggcgcgacggggcggtcacaagccgacgcgcccgagatcgac
ggccacgtctacctccgcgacgtcgcggcgaccctcaaggccggcgatatcgtcgatgtc
acggtcgaggacgccgacgagcatgatctgtttggggtagtagccggctga
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