Sphingopyxis sp. OPL5: EEB18_005575
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Entry
EEB18_005575 CDS
T10726
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
spog Sphingopyxis sp. OPL5
Pathway
spog03030
DNA replication
spog03410
Base excision repair
spog03420
Nucleotide excision repair
spog03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EEB18_005575 (polA)
03410 Base excision repair
EEB18_005575 (polA)
03420 Nucleotide excision repair
EEB18_005575 (polA)
03440 Homologous recombination
EEB18_005575 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spog03032
]
EEB18_005575 (polA)
03400 DNA repair and recombination proteins [BR:
spog03400
]
EEB18_005575 (polA)
Enzymes [BR:
spog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EEB18_005575 (polA)
DNA replication proteins [BR:
spog03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EEB18_005575 (polA)
DNA repair and recombination proteins [BR:
spog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
EEB18_005575 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EEB18_005575 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HAMP_N3
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
QNO28424
LinkDB
All DBs
Position
1152616..1155432
Genome browser
AA seq
938 aa
AA seq
DB search
MSEKNHLYLVDGSSYIFRAYHRLPPLTNPQGTPVGAVYGYTTMLWKLAKDLHDADGPTHL
AVILDHSSKSFRNDIYDQYKANRPEPPEDLRPQFPLIRDATRAFSLPCIELEGFEADDLI
ASYTEAAVAAGWDVTIVSSDKDLMQLIREPAGDAPQVDMLDTMKNVRLGLDAVNEKFGVT
PDLVGDVLALMGDAVDNVPGVRGVGPKTATKLIVEYGDLEKALAGAETMKPSKLRDNLIE
HADMARLSRILVELKRDTPMPDTLDQLKLGAIPPEPLKLFLDEHGFRSLSAKLDLGATPG
GPPTLPRTGAAPAPVPAGAPSTPTLPPMPAIDRSLYETVTTIEALDRWIAMAKAAHVVAV
DTETASLDSVTGTLVGVSLSTGAGKACYIPLGHGGTDMFAEKPDQIPLAEALDRLRPLFA
DDAVLKVGHNLKYDIGVLAQHDIVIAPYDDTLVMSFALDAGKHQHGLDELAKLHLDHICL
TFKEMCGTGKSQISFAEVQLDRATEYAAEDAEVAWRLWKLLKVRLPLEGGTRVYEMVDRP
LAAIVEAMERAGIMVNRDYLAKLSGEFATEMLRIEGEIHTLAGQPFAIGSPKQLGEILFD
KLGLKGGRKGKSGDWSTDQNELERLERDGVPIARKILEWRQLAKLKSTYTDALQQQINAK
TGRVHTSYSLVGAQTGRLSSTDPNLQNIPIRTETGRQIRDAFIAAPGHVLIAADYSQIEL
RLAAHMADVPELKEAFAQGQDIHAATAIELFGESNRDTRGKAKTVNFSILYGISRWGLAG
RLEVTPDEAQALIARYFERFPGISDYITDTLESVRAKGYTETLFGRKTWFPRIKAASQNE
RAGSERAAINAPIQGTSADLIKRAMARMPAALAEAGLSDVKMLLQVHDELVFEAPEDKAA
AAGDVIRSVMMGAAEPALTLSVPLEVEIGTGKSWGEAH
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaaaagaatcatctctatctggtcgatggctccagctacatcttccgcgcctat
caccgcctgccgccgctgacgaacccgcaagggacgccggtcggcgcggtctatggctat
acgacgatgctgtggaagctggcgaaggacctgcacgacgccgacgggccgacgcatctg
gcggtgatcctcgaccactcgagcaagtcgttccgtaacgacatctacgaccagtataag
gcgaaccggcccgagccgcccgaggacctgcgcccgcaatttccgctgatccgcgacgcg
acgcgcgccttctcgctgccgtgtatcgagcttgagggtttcgaagccgacgacctgatc
gcgagctataccgaggcggcggtcgccgctggctgggacgtcacgatcgtctcctccgac
aaggatctgatgcagctgatccgcgaaccggcgggcgacgcgccgcaggtcgacatgctc
gacacgatgaagaatgtccgcctcggcctcgacgcggtgaacgagaaattcggcgtcacc
cccgacctcgtcggcgacgtgctcgcgctgatgggcgacgcggtcgacaatgtccccggc
gtgcgcggggtcgggccgaagaccgcgaccaagctgatcgtcgaatatggcgacctcgaa
aaggcgctcgcgggtgccgagacgatgaagccgtcgaaactgcgcgacaatctgatcgag
catgccgatatggcgcggctgtcgcgtatcctcgtcgagctgaagcgcgacacgccgatg
cccgacacgctcgaccagctcaagctcggcgcgatcccgcccgaacccttgaagctcttc
ctcgacgaacatggtttccgctcgctgtcggcgaagctcgatctcggcgcgacccccggt
ggcccgccgacgctgccgcgcaccggcgcggcccccgcgccggttcccgctggcgcaccc
tcgaccccgaccctgcccccgatgccggcgatcgaccgctcgctttacgagacggtgacg
acgatcgaggcgctcgaccgctggatcgcaatggccaaagcggcgcatgtcgtcgcggtc
gacaccgaaaccgcgagcctcgacagcgtcacgggcacccttgtcggggtcagcctgtcg
accggtgccggcaaggcctgttacatcccgctcggccatggcggcaccgacatgttcgcc
gaaaagcccgaccagattccgctggccgaagcgctcgatcgcctgcgcccgctgttcgcc
gacgatgcagtgctcaaggtcggccataacctgaaatatgacatcggtgtgctcgcgcag
cacgacatcgtgatcgcgccctatgacgacacgctggtgatgagcttcgcgctcgacgcg
ggcaagcaccagcacgggctcgacgagctggcgaagctccacctcgatcacatctgcctc
accttcaaggagatgtgcgggaccggcaagtcgcagatcagctttgccgaagtccagctc
gaccgcgcgaccgaatatgccgccgaagacgccgaggtcgcatggcgcctgtggaagctg
ctcaaggtccgcctgccgctcgaaggcggcacccgcgtttacgaaatggtcgaccgcccg
ctcgccgcgatcgtcgaggcgatggaacgcgccgggatcatggtcaatcgcgactatctg
gcgaagctgtcgggcgagttcgcgaccgaaatgctgcgcatcgagggcgaaatccacacc
ctcgcgggccagcccttcgccatcggcagccccaagcagctcggcgaaatattgttcgac
aagctcggcctcaagggcggacgcaagggcaagtcgggcgactggtcgaccgaccagaac
gagctcgaacggctcgaacgcgacggcgtgccgatcgcgcgcaagatattggaatggcgc
cagctcgccaagctgaagtccacctacaccgacgccttgcagcagcagatcaacgcgaag
accggacgcgtccacaccagttacagcctcgtcggtgcgcagaccgggcgattgtcttcg
accgacccgaaccttcagaacattccgatccgcaccgagaccgggcgccagatccgcgac
gccttcatcgccgcgccgggtcatgtcctgatcgcggccgactatagccagatcgaactg
cgcctcgccgcgcatatggccgatgtgcccgaactgaaggaagcctttgcgcaggggcag
gacatccacgccgcgaccgcgatcgagctgttcggcgaaagcaaccgcgacacgcgcggc
aaggccaagacggtcaatttctcgatcctctacggcatttcgcgctggggcctcgcaggg
cggcttgaggtcacgcccgacgaggcgcaagcgctgatcgcgcgctatttcgagcgtttc
ccggggatcagcgattatatcaccgacacgctggagagcgtccgcgccaagggctatacc
gagacgctgttcgggcgaaagacctggttcccgcggatcaaggcggcaagccagaacgag
cgcgcgggcagcgagcgcgccgcgatcaacgcgccgatccagggcaccagcgccgacctg
atcaagcgcgcgatggcgcgcatgcccgccgcgctcgccgaggccggcctgtccgacgta
aaaatgctcctacaggtccatgacgaactcgtcttcgaagcgcccgaggacaaggccgcc
gcggcgggcgacgtcatccgcagcgtgatgatgggcgccgccgaaccggcgctgacgctt
tcggtcccgctggaggtcgaaatcggcaccggcaagagctggggcgaagcgcattga
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