Sphingopyxis sp. OPL5: EEB18_008680
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Entry
EEB18_008680 CDS
T10726
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spog Sphingopyxis sp. OPL5
Brite
KEGG Orthology (KO) [BR:
spog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spog03016
]
EEB18_008680
Enzymes [BR:
spog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EEB18_008680
Transfer RNA biogenesis [BR:
spog03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EEB18_008680
Prokaryotic type
tRNA splicing ligases
EEB18_008680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QNO28991
LinkDB
All DBs
Position
complement(1805961..1807187)
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AA seq
408 aa
AA seq
DB search
MTQTTYEVLNVEGGRPVKMWTRGVPVEDMARAQLRKAAQMPFVFKHVAAMPDVHVGIGAT
VGSVIPTKGAVIPAAVGVDIGCGMMAARTTLMAHDLPDTLEGIRSAIEAAVPHGRSVGRG
KRDTGSWGDPPAAIVDAWATLAERFGHIVAKHPRLKNTNNLTHLGTLGTGNHFIELCLDT
EARVWVMLHSGSRGVGNAIGTYFIELAKKDMRKWFINLPDEDLAYFPEGTDHFDDYVEAV
GWAQDFAALNRRMMMANVIAALRRQIAKPFEAEAEAVNCHHNYVTRENHFGENVLVTRKG
AVRAAKGTMGIIPGSMGAKSFIVRGLGNPESFDSCSHGAGRVMSRTAAKKLVTLDEHIAD
TAGVECRKDEGVIDETPKAYKPIEAVMAAQADLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgacccagacgacttatgaagtgctgaacgtcgagggcggacgcccggtcaagatgtgg
acccgcggcgtgcccgtcgaggacatggcgcgcgcgcagcttcgcaaggcggcgcagatg
ccgttcgtgttcaagcatgtcgcggcgatgcccgacgtccacgtcggcatcggcgcgacc
gtcggatcggtgatcccgaccaagggcgcggtcattccggcggcggtcggggtcgacatc
ggctgcggcatgatggcggcgcgcaccacgctgatggcgcacgacctgcccgacacgctc
gagggcatccgcagcgcgatcgaggcggcggtgccgcacggccggtcggtcgggcgcggc
aagcgcgacaccggttcgtggggtgatccgccggcggcgatcgtcgacgcctgggcgacg
ctcgccgagcgtttcggccatatcgtcgccaagcatccgcggctgaagaacaccaacaac
ctcacgcatctggggacgctcgggacgggaaaccatttcatcgagctgtgcctcgatacc
gaggcgcgggtgtgggtgatgctccattcggggtcgcgcggcgtcggcaatgcgatcggc
acctacttcatcgaactggcgaagaaggacatgcgcaaatggttcatcaacctgcccgac
gaagatctggcgtacttcccggaagggaccgaccatttcgacgattatgtcgaggcggtg
ggctgggcgcaggactttgcggcgctgaaccggcggatgatgatggcgaatgtgatcgcg
gcgctgcggcgccagatcgccaagcccttcgaggccgaagccgaagcggtgaactgccat
cacaattatgtgacgcgcgagaatcacttcggcgagaatgtcctcgtcaccagaaaaggt
gccgtgcgcgcggcgaaaggcacgatggggatcatcccgggttcgatgggcgcgaaatcg
ttcatcgtgcgcgggctgggcaatccggagtcgttcgatagctgcagccatggcgcgggc
cgcgtcatgagccgcaccgcggcgaagaagctcgtcacgctcgacgagcatatcgccgac
accgcgggggtcgaatgccgcaaggacgaaggcgtgatcgacgaaacgcccaaggcgtac
aaaccgatcgaggcggtgatggcggcgcaggccgacctcgtcgagatcgtccatacgctg
aagcaggtggtgtgcgtgaaggggtga
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