Sphingopyxis sp. OPL5: EEB18_009280
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Entry
EEB18_009280 CDS
T10726
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spog Sphingopyxis sp. OPL5
Pathway
spog03018
RNA degradation
Brite
Enzymes [BR:
spog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EEB18_009280
Messenger RNA biogenesis [BR:
spog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EEB18_009280
Ribosome biogenesis [BR:
spog03009
]
Prokaryotic type
rRNA processing factors
EEB18_009280
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QNO29097
LinkDB
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Position
1932484..1935129
Genome browser
AA seq
881 aa
AA seq
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MTTRMLIDARHREETRVAVTKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEAAMRAEEDLDELEGDVADVEY
HDDENGDAPAPETVGEDHDGDEGDDENGDAGDDAEEGTEENKDGRGDRKGRGRGRDGRKG
GRGRGRRRDEDEDGESRMSLRRRYKIQDVIRRRQVMLVQVVKEERGNKGAALTTYLSLAG
RYCVLMPNTMHGGGISRKISNGADRRKLKAMVDELNLPPTMGCIVRTAGMSRTKVEIKRD
FDYLARVWDEIREKTLGSSAPALIHSDSDLVKRAIRDIYHKDIEEVLVEGEDGYRAAKQF
MKLLMPSHARRVQQYADPVSLYQRYGVEDQLAGMLNPVVQLKSGGYLVINPTEALVSIDI
NSGRSTREHNIEQTAVSTNLEAAHEIARQLRLRDMAGLIVIDFIDMDHGSNVRKVERAMK
DALKNDRARIQIGRISGFGLMEMSRQRLRTGVLEASTRPCPHCEGTGLVRTASSAGLSAL
RMIEEEAARGKGSKIILRASQEATFYLLNEKRRELREIEDLYGVSVEILPDGETEGARMA
IEVGGPPPVARRSFAPIAPIEDDDDDEEYFDEEEEAEAEAEAEKTERPARREREEGDADT
DGEGRKRRRRRRRGRRGRRDDEGNEIGEGAEGGDREGDAPEDDDAGEAVAEVPVDAEGET
AAKPRRRRGGRGRKPRDEEAEEAEAAEAEAPIEAEVAAEPVIEEAPVAEKPKRKPRRTKA
QIAAEEAEAAAAAEAPAPVEAVAEETTETVAAAEAEVEPAKPAPKKRAPRKTKAAAAAAV
EEAATASTEVAAQDGEAVPVGSDEATDGEPRRGWWQRTFGN
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgcatgttgatcgacgcgcggcaccgggaagaaacccgtgtcgccgtcacc
aagggaaaccgcatcgaggagtttgatttcgagtccgccgagcacaagcagctcaagggc
aatatctatctggccaaggtaacccgtgtcgaaccgtcgctgcaggcggcattcgtcgaa
tatggcggcaatcgccacggcttcctcgcgttcagcgaaatccatcccgactattaccag
attccgaaggaagatcgcgaagcgctgctccgcgaagaggctgagcatgccgccgaggcc
gcgatgcgcgccgaggaagacctcgacgagctggaaggcgatgtcgccgacgtcgaatat
catgacgacgaaaatggcgatgccccggcccccgaaaccgtcggcgaagaccatgacggc
gacgaaggcgacgacgaaaatggcgacgccggggacgatgccgaagagggcaccgaagaa
aacaaggacggtcgcggcgaccgcaagggccgtgggcgcgggcgcgacggtcgcaagggc
ggccggggccgcggacgccgccgcgacgaggacgaggacggcgaaagccgcatgtcgctg
cgtcgccgctataagatccaggacgttatccgtcgccgccaggtgatgctggtccaggtc
gtcaaggaagaacgcggcaacaagggcgctgccctcaccacctatctgtcactcgccggc
cgctattgtgtgctgatgccgaacacgatgcacggcggcgggatcagccgcaagatttcg
aacggcgccgatcgccgcaagctgaaggccatggtcgacgagcttaacctgccgccgacg
atgggctgcatcgtgcgcaccgccggcatgagccgcaccaaagtcgagatcaagcgcgac
ttcgactatctggcgcgcgtctgggacgagattcgcgaaaagaccctagggtcgagcgcg
ccggcgctgatccattcggacagcgacctggtcaagcgcgcgatccgcgacatctatcac
aaggatatcgaggaagtactcgtcgagggcgaggacgggtatcgtgccgccaagcagttc
atgaaattgctgatgccgagccacgcgcgccgcgtgcagcaatatgccgacccggtatcg
ctctatcagcgctatggcgtcgaggaccagctcgccgggatgctcaatcccgtcgtccag
ttgaaatcgggcggttatctcgtgatcaacccgaccgaggcgttggtgtcgatcgacatc
aactcgggccggtcgacgcgcgagcataatatcgagcagaccgcggtcagcaccaatttg
gaagccgcgcacgagatcgcgcgccaactgcgtctgcgcgacatggccgggctgatcgtg
atcgacttcatcgacatggatcatggttcgaacgtccgcaaggtcgagcgcgccatgaag
gacgcgctgaagaacgaccgcgcgcgcatccagatcggccgcatctcgggctttgggctg
atggagatgagccgccagcgcctgcgcaccggcgtgctcgaggcctcgacccgcccctgc
ccgcattgcgaaggtaccggcctcgtccgcaccgcgtcgtcggcgggcctcagcgcgctg
cgcatgatcgaagaggaagccgcacgcggcaagggcagcaagatcatcctgcgcgcgagc
caggaagcgaccttctacctgctcaacgaaaagcgccgcgaactgcgcgagatcgaggat
ctgtacggcgtcagcgtcgaaatcctgcccgacggcgagaccgagggcgcgcgcatggca
atcgaggtaggcggcccgccgccggtcgcgcgccgtagcttcgccccgatcgccccgatc
gaggacgatgacgacgacgaggaatatttcgacgaggaagaagaggccgaggcggaagcc
gaggcggaaaagaccgagcgccccgcccgccgcgaacgcgaagaaggcgacgccgacacc
gatggcgaaggccgcaagcgccgtcgtcgtcgccgtcgtggccgccgcggccgccgtgac
gatgagggcaatgagatcggtgaaggcgccgaaggcggagaccgcgaaggcgacgcgccc
gaggatgacgacgccggcgaagcggtcgccgaagtccccgtcgacgccgaaggcgaaacc
gcagccaagccgcgccgccgccgtggcggtcgtggccgcaagccgcgtgatgaggaagcc
gaagaggccgaggccgcagaagccgaagccccgatcgaggccgaagtcgctgccgagccg
gtgatcgaagaagcgcccgtcgctgaaaagccgaagcgcaagccgcgccggaccaaggcg
cagatcgccgccgaagaggccgaagccgcagcagcggccgaagcgcccgcacccgtcgaa
gccgtcgctgaggaaacgaccgaaaccgtcgccgcagccgaagccgaggtcgaacccgcc
aagcccgcgcccaagaagcgtgcgccgcgcaagaccaaggccgcagcggccgccgcagtc
gaagaggccgcgaccgcatcgaccgaggtcgcggcgcaggacggcgaagccgtccccgtc
ggcagcgacgaagccaccgacggcgaaccccgtcgcggctggtggcagcgcacctttggc
aactga
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