Sphingopyxis sp. OPL5: EEB18_009875
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Entry
EEB18_009875 CDS
T10726
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
spog Sphingopyxis sp. OPL5
Pathway
spog03410
Base excision repair
spog03430
Mismatch repair
spog03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EEB18_009875 (recJ)
03430 Mismatch repair
EEB18_009875 (recJ)
03440 Homologous recombination
EEB18_009875 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spog03400
]
EEB18_009875 (recJ)
DNA repair and recombination proteins [BR:
spog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
EEB18_009875 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
EEB18_009875 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EEB18_009875 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF6986
Motif
Other DBs
NCBI-ProteinID:
QNO29206
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Position
2077547..2079313
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AA seq
588 aa
AA seq
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MTDTALGITRSIAGQPWHWRRASADMASENLAPDDLVTQLLLARGVPRDDLERQRAPTLR
GFMPDPALFKGMDEAAARLADAVERQEAITIFGDYDVDGATSAALLVRLLRDLGVPVGAY
IPDRLMEGYGPSGAALVRIGEAGSKLVVTVDCGAQAFEAIAEANAAGIETIIVDHHQCAT
TLPAAFAVVNPNRLDEAPDAAVHGNLAAVGVAFLLGAALLRVLRGRDFFAGRAEPALLDL
LDLVALGTVADVARLTGFNRALVTQGLKIMARRGNIGLAALMDAARLTKAPTATDMGFAL
GPRINAGGRVGKSDLGVRLLTTSDPQEAADISQELNRLNEERRAIEAGVLDEAMAMSERA
ANAPVAIVAGEGWHPGVIGIVAGRLKEKLRRPAIVIALGEDGIGKGSGRSINGVDLGAAI
LAAKESGLLIAGGGHAMAAGLTVEAGKLDALGAFLNERLAADVERASGDRALLIDAVLAP
RGISPLWCEAIESAGPYGAGWPAPRVATGPVRIVEASIVGTDHVRLTVSGDDGARFKAIA
FRSAETELGQTLLHARGRKLWLAGRAKRDDWGSRPAAELHLEDAAWAD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaccgctctgggtatcacgcgctcgatcgccgggcagccgtggcattggcgc
cgcgcgagcgccgacatggcgtccgagaatctggcacccgacgacctcgtcacccaattg
ctgctcgcgcgcggggtgccgcgcgacgacctcgagcgccagcgcgcgccgacgctacgc
ggcttcatgcccgacccggcgctgttcaagggcatggacgaagccgccgcgcggctcgcc
gacgcggtcgagcgacaagaggcgatcaccatcttcggcgattatgacgtcgacggcgcg
acctcggcggcgctgctcgtgcgactgctgcgcgatctcggcgtcccggtcggcgcctat
atccccgaccggttgatggagggctatggcccgtcgggcgcggcgctggtccggatcggc
gaggcgggatcgaagctggtcgtcaccgtcgattgcggcgcgcaggcgttcgaagcgatc
gccgaggccaatgccgcggggatcgagacgatcatcgtcgatcatcatcaatgcgcgacc
accctgcccgccgccttcgcggtggtgaacccgaaccggctcgacgaggcgcccgatgcg
gcggtgcacggcaatctggcggcggtcggggtcgccttcctgctcggcgcggcgttgctg
cgcgtgctgcgcgggcgcgatttcttcgccgggcgcgccgaaccggcgctgctcgacctg
ctcgatctcgtcgcgctcggcaccgtcgccgacgtcgcgcgcctgaccggtttcaaccgc
gcgctggtgacgcaggggctgaagatcatggcgcggcgcggcaatatcgggctggcggcg
ctgatggacgcggcgcggctgaccaaggcgccgaccgcgaccgacatgggcttcgcgctc
ggcccgcgaatcaacgccggcgggcgcgtgggcaaatcggacctcggggtccggctgctg
acgacgagcgacccgcaggaagccgccgacatttcgcaggaactcaaccgcctgaacgag
gagcgccgcgcgatcgaggcaggggtgctcgacgaggcgatggcgatgagcgagcgcgcc
gccaacgcgccggtcgcgatcgtcgcgggcgaggggtggcaccccggggtgatcggcatc
gtcgcggggcggctgaaggagaagctccgccggccggcgatcgtcatcgcgctgggcgag
gacggtatcggcaaggggtcggggcgttcgatcaacggcgtcgaccttggcgccgcgatc
ctcgccgccaaggagagcggcctgctgatcgcgggcggcggtcatgcgatggcggcggga
ttgaccgtcgaggccggcaagctcgacgcgctcggcgccttcctcaacgagcggctcgcc
gccgatgtcgagcgcgcgagcggcgaccgcgcattgctgatcgacgcggtgcttgcgccg
cgcgggatatcgcctttgtggtgcgaggcgatcgagagcgccgggccttatggcgcgggc
tggccggcgccgcgcgtcgcgaccgggccggtgcgaatcgtcgaggcgagcatcgtcggc
accgaccatgtccgcctgacggtgtcgggcgacgacggtgcaaggttcaaggcgatcgcc
tttcgcagcgccgaaaccgaattggggcagacattgctgcacgctcgcgggcgcaaatta
tggctcgcggggcgcgcaaagcgcgacgattggggcagccgcccggccgccgagctgcat
ctggaggatgccgcctgggccgattag
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