Sphingopyxis sp. OPL5: EEB18_013920
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Entry
EEB18_013920 CDS
T10726
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spog Sphingopyxis sp. OPL5
Pathway
spog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EEB18_013920 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spog03019
]
EEB18_013920 (pnp)
03016 Transfer RNA biogenesis [BR:
spog03016
]
EEB18_013920 (pnp)
Enzymes [BR:
spog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EEB18_013920 (pnp)
Messenger RNA biogenesis [BR:
spog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EEB18_013920 (pnp)
Transfer RNA biogenesis [BR:
spog03016
]
Prokaryotic type
tRNA degradation factors
EEB18_013920 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
DUF3016
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
QNO25879
LinkDB
All DBs
Position
2900527..2902854
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AA seq
775 aa
AA seq
DB search
MFDVKKVSIEWGGETLTLETGKVARQADGAVVATLGETVVLCAVTAAKTVKEGQDFFPLT
VHYQEKYSGAGRIPGGFFKRERGATEKETLVSRLTDRPIRPLFPEGFYNEINVIAQVLSY
DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYVDGEYILNPTDEQVAAGDLDLVVA
ATYDAVMMVESEANELSEEVMLGAVLFAHDACKEVVKAIVKLAEQAAKDPWDMAEQADLS
AAKDKLKKLIGKDIAAAYKLTDKSARSNALNEARAAAKAAFADAAPQDQMAAGKLMKKLE
AEIVRGAILKDGKRIDGRTTTQIRPILAETHFLPRAHGSALFTRGETQTIATCTLGTKES
EQMIDGLNGLSYSNFMLHYNFPPYSVGEVGRFGAPSRRDIGHGKLAWRALHAVLPTKDEF
PYTIRITSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAILSDI
LGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITRDIFEAALNQAKEGRAHILGEMAKAL
GETRSELSAHAPRIETMQIDKSKIRDIIGTGGKVIREIVATTGAKVDIDDEGLIKISSSD
LDQIEAARKWISGIVEEAEVGKIYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIANERVEK
VSDVLSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGAELEDTRPAREPREPRGDRGPRRD
GGDRGDRGPRRDGGGGRDRGPRRDGGGEGRSDRGPRRERSEGPEDQGHVPDFLKD
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgtgaaaaaagtatcgatcgagtggggcggtgaaacgctgaccctcgaaacg
ggcaaggttgcccgtcaggccgacggcgcggttgtcgcgacgctcggcgaaaccgtcgtc
ctgtgcgcggtcaccgctgccaagacggtcaaggaagggcaggatttcttcccgctcacc
gtccattatcaggaaaaatattcgggcgcgggccgcattcccggcggcttcttcaagcgc
gaacgcggtgcgaccgaaaaggaaaccctggtttcgcgtttgaccgatcgtccgatccgt
ccgctgttccccgaaggtttctataacgagatcaacgtcattgcgcaggttctgagctat
gacggccacaacgagcccgatatcctagcgatggtcgccgcgtcggccgccctcaccatt
tcgggcgtgcccttcatgggcccaatcggcgccgcgcgcgtcggttatgtcgatggcgaa
tatattctgaacccgactgacgaacaggttgccgccggcgatctcgatctcgtcgtcgcc
gccacctacgacgcggtgatgatggtcgaatccgaagcgaatgagctgtcggaagaggtc
atgctcggtgccgtcctgttcgcgcacgacgcgtgcaaggaagtcgtcaaggcgatcgtc
aagctcgccgaacaggctgccaaggatccctgggacatggccgagcaggccgacctgtcg
gccgccaaggacaagctgaagaagctgatcggcaaggacatcgccgctgcgtacaagctg
accgacaaatcggcccgctcgaacgcgctgaacgaagcccgcgccgccgccaaggccgcc
ttcgccgacgccgcgccgcaggaccagatggctgccggcaagctgatgaagaagctcgaa
gccgagatcgttcgcggcgccattctcaaggacggcaagcgcatcgacggccgcacgacg
acgcagattcgtcccatcctcgccgaaacgcacttcctgccccgcgcacatggttcggcg
ctgttcacccgcggcgagacgcagacgatcgcgacctgcaccctgggcaccaaggaaagc
gagcagatgatcgacgggctcaacggcctgtcctactcgaacttcatgctgcactataac
ttcccgccctattcggtcggcgaagtcggtcgtttcggggcgcccagccgccgcgacatc
ggccatggcaagctcgcctggcgtgcgctgcacgcggtgttgccgacgaaggacgagttc
ccgtacacgatccgcatcaccagcgacatcaccgagtcgaacggctcgtcgtcgatggca
tcggtgtgtggtggttcgctcgcgatgatggacgccggcgtgccgatcaagcgccccgtc
tcgggcatcgcgatgggcctgatcctcgaaggcaaggactatgcgatcctgtcggacatc
ctcggcgacgaagatcacctcggcgacatggacttcaaggtcgcgggcacgtccgaaggc
atcaccacgatgcagatggacatcaagatcgcgggcatcacccgcgacatcttcgaagcc
gcgctgaaccaggccaaggaaggccgcgcacacatcctcggtgaaatggccaaggcgctc
ggcgaaacccgcagcgaactgtcggcgcacgccccgcgcatcgaaacgatgcagatcgac
aagtcgaagatccgcgacatcatcggcaccggcggcaaggtgatccgcgagatcgtcgcg
accaccggggccaaggtcgacatcgacgacgaaggcctgatcaagatctcgtcgagcgac
ctcgaccagatcgaggcggcccgcaagtggatcagcggcatcgtcgaggaagccgaagtc
ggcaagatctatgacggcaaggtcgtcaacctcgtcgatttcggggcgttcgtgaatttc
atgggcggcaaggacggtctcgtccacgtcagcgaaatcgccaacgagcgcgtcgagaag
gtctcggacgtcctcagcgaaggccaggaagtcaaggtcaaggtcctcgagatcgaccag
cgcggcaaggttcgcctgtcgatgcgcgttgtcgaccaggaaaccggcgccgagctcgaa
gatacccgcccggcgcgcgaaccccgcgagccccgcggcgatcgtggtccgcgccgtgac
ggcggcgaccgtggcgatcgcggcccgcgccgcgacggtggcggcggtcgcgaccgcggc
ccgcgccgcgacggcggcggcgaaggtcgcagcgatcggggcccgcgccgcgaacgcagc
gaaggtccggaagatcagggtcatgtgcccgacttcctgaaggactaa
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