Sphingopyxis sp. OPL5: EEB18_015445
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Entry
EEB18_015445 CDS
T10726
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spog Sphingopyxis sp. OPL5
Pathway
spog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EEB18_015445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spog03019
]
EEB18_015445
03009 Ribosome biogenesis [BR:
spog03009
]
EEB18_015445
Enzymes [BR:
spog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EEB18_015445
Messenger RNA biogenesis [BR:
spog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EEB18_015445
Ribosome biogenesis [BR:
spog03009
]
Prokaryotic type
rRNA helicases
EEB18_015445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QNO26161
LinkDB
All DBs
Position
complement(3197387..3199231)
Genome browser
AA seq
614 aa
AA seq
DB search
MPFETMSPVLADALTARGYENLTPVQTHVVEPEAVGRDLLVSAQTGSGKTVAFGLAMADQ
LIEDGRLPFATSPLALIIAPTRELAMQVSRELSWLYAKAGARIATCVGGMDASKERRTLN
QGVQIVVGTPGRLRDHLERGALDLTALRVAVLDEADEMLDMGFREDLEEILDATPETRRT
LMFSATIPKPIANMAKRYQRDALRISTVGEDRGHGDISYQAVTVAPADIEGAVINLLRLH
DAETAMLFCATRDNVRRLHASLTDRGFAAVALSGEHSQNERNAALQALRDRRAKVCVATD
VAARGIDLPSLSLVIHVEIPRDAETLQHRSGRTGRAGKKGTAVIIVPYPRRRRVDGMLRG
ARINAEWMEAPTAADVRLKDQERLIEKLLAPVEHEPEDIELAQRLMAERSPEDIAASLVR
AHRALMPAPEDLIDNSARGRDSAGRPERGERFERPDRGEGGGDRREGFEDSVWFRLNIGR
HQNADPRWILPLLCRRGHVTKGEIGAIRIGPKETMFNIPRAIADRFAEAVVRSANEDGED
DSGVAITPAPDGPTYPPRRDKGSGDRAPRATLGRAPGGDRSGPRGPRSPGGPGGNTERYK
PKPFGQRSPRRPSK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcgaaacgatgtctcccgtccttgcggacgctctgaccgcgcgcggttacgaa
aatctcacccccgtccagacccacgtcgtcgaacccgaagcggttggccgcgacctgctg
gtctcggcgcagaccggctcgggcaagaccgtcgccttcggcctcgcgatggccgaccag
ctgatcgaggacggccgcctgcccttcgcgacctcgccgcttgcgctgatcatcgccccg
acccgcgaactcgcgatgcaggtcagccgtgaactcagctggctctatgccaaggccggc
gcgcgcatcgcgacctgcgtcggcggcatggacgccagcaaggaacgccgcacgctgaac
cagggtgtgcagatcgtcgtcgggacccccggccgcctgcgcgaccatctcgaacgcggc
gcgctcgacctcaccgcgctgcgcgtcgcggtgctcgatgaggccgacgaaatgctcgat
atgggctttcgcgaagacctggaagaaatcctcgacgcgacccccgagacgcgccgcacc
ctgatgttctcggcgaccatccccaagccgatcgcgaacatggcgaagcgctatcagcgc
gacgcactgcgtatctcgaccgtgggcgaggatcgcggtcacggcgacatcagctatcag
gcggtgaccgttgcccccgccgatatcgagggcgcggtgatcaacctgctgcgcctccac
gacgccgaaaccgcgatgctgttctgcgccacgcgcgacaatgtccgccgcctccacgcc
agcctgaccgatcgcggtttcgccgccgtcgcgctgtcgggcgagcatagccagaacgaa
cgcaacgccgcgctgcaggcgctgcgcgatcgccgcgccaaggtctgcgtcgcgaccgac
gtcgccgcacgcgggatcgacttgcccagcctgtcgctggtgatccacgtcgaaatcccg
cgcgacgccgaaaccctccagcaccgctccggccgcaccggccgcgcgggcaaaaagggc
accgcagtcatcatcgttccctatccgcgtcgtcgccgcgtcgacggcatgctgcgcggc
gcgcggatcaacgccgagtggatggaagcgccgaccgccgccgatgtccgcctgaaggat
caggaacggctgatcgagaaattgctcgccccggtcgagcatgagcccgaggatatcgaa
ctcgcgcagcgcctgatggccgaacgctcgcccgaggacatcgccgcgtcgctcgtccgc
gcccaccgcgcgctgatgccggcgcccgaggatctgatcgacaacagcgcgcgcggccgc
gacagcgccggccgccccgaacgcggcgagcggttcgagcgtcccgatcgcggcgaaggc
ggcggcgaccgccgcgaagggttcgaggatagcgtctggttccgcctcaacatcggccgc
caccagaacgccgacccgcgctggatcctgccgttgctatgccgccgcggtcatgtgacc
aagggcgagatcggcgcgatccgtatcgggccgaaggaaacgatgttcaacatcccccgc
gcgatcgccgaccgcttcgccgaagcggtggtgcgcagcgccaacgaggatggcgaggac
gacagcggcgtcgcgatcacccccgcacccgacggcccgacctacccgccacgccgcgac
aagggatcgggcgaccgggcaccgcgcgcgacgcttggtcgtgcccccggcggtgatcga
tcgggtccccgcggaccgcgtagtccgggcggccccggcggcaacaccgaacgctacaag
cccaagcccttcggccagcgcagcccgcgccgcccgtcgaagtaa
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