Sphingopyxis sp. OPL5: EEB18_015995
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Entry
EEB18_015995 CDS
T10726
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spog Sphingopyxis sp. OPL5
Pathway
spog03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EEB18_015995 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spog03400
]
EEB18_015995 (mfd)
Enzymes [BR:
spog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EEB18_015995 (mfd)
DNA repair and recombination proteins [BR:
spog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EEB18_015995 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QNO26262
LinkDB
All DBs
Position
complement(3313549..3317043)
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AA seq
1164 aa
AA seq
DB search
MTRSAADIFAAIASAPAPLTLARAADGFLPLLLADLARASDKRLVYVATDDTAMQAVADA
APFFAPDLAVHRFPAWDCLPYDRAGPSMRVSADRLATLSALQQPAKRGELILTTVAAITQ
RTLTPFRIRQLATTLAAGQRIDRDALAELLVANGFSRVDTVADQGEFAVRGGILDLFPAG
EENGLRVDFFGDEIESIRRFDPADQRSLGPAKALQLLPASETLLDEATIKRFRSAYRDLF
GGQSTGDPLYQAVSEGRRQAGMDHWLPLFEERLATLFDHIDPATPVLRGHRTEATAETRF
AAIADYHANRVAAERESPGSYRPLTPETLYLTETDWGAAAASRPIHIVTPFDVPPAATII
DLETFAARDFTPERAADLNVYHKVADHLSDERRKGRRTIIASYSVGARDRLSGLLRDHGV
TSLAPADGWQDALGTASAETGGATAMVVLPLDHGFASDAISLLTEQDILGERLVRRQKRR
KSADAFLAELATLSVGDLVVHLDHGIGRYEGLTSIPVGNSPHDCVALTYSGGDKLYVPVE
NLDVLSRYGGESDGVGLDKLGGEAWQRRKARMKERIREIAGELLATAAQRALRSGELLAA
DAAYPAFADRFPYQETDDQDRAIGDVLADMASGRPMDRLVCGDVGFGKTEVALRAAFVAA
MAGVQVALVCPTTLLARQHFTNFVERFKGFPINVGRLSRLVPGAEAQKTRDGLTSGQIDI
VVGTHAVIAKSVEFKNLGLVIVDEEQRFGVVHKERLKQLKTDVHVLTLTATPIPRTLQMA
MSGLRELSVIQTPPVDRLAVRTYVAPWDAVVLREALLREHDRGGQSFFVVPRIKDLPDIE
EFLRNRVPEIKYVVAHGQMTPTEVEDRMSAFYDRKYDVLLSTTIVESGLDIPSANTLIIH
RADRFGLAQLYQLRGRVGRAKTRAYAYLTTPEHGAITDTAEKRLKLLGDLDTLGAGFQLA
SHDLDIRGAGNLVGDEQSGHIREVGFELYQSMLEEAILVAKAEGAGKLPPREALSPTITV
DAPILIPEDYVPDLPLRMALYRRLNDAQDRPALDAFAAEMIDRFGPLPPETANLVQLMEI
KANAKAAGIAKLDVGTKGALVSFHGDQFANVPGLIAYVERLKGRARIRPDNKLSISGDWV
STGARLNGALQLSKGLGKLAKQAG
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgaagcgccgccgacatatttgccgccatcgcgtcggcccccgcaccgctgacg
ctggcgcgcgccgccgacgggttcctgccgctgctgctcgccgacctcgcgcgcgccagc
gacaaaaggctggtctatgtcgcgaccgacgataccgcgatgcaggcggtcgccgacgcc
gcgcccttctttgcgcccgacctcgccgtccatcgcttcccggcgtgggattgcctgccc
tatgatcgcgccggaccgtcgatgcgggtcagcgccgaccggctggcgacgctgtccgcg
ctgcaacagcccgccaaacgcggcgaactgatcctgaccaccgtcgccgcgatcacccag
cgcacgctgaccccgttccgcatccgccagctcgcgacgacgctggcggcaggtcagcgg
atcgaccgcgacgcgctggccgagctgctcgtcgccaacggcttcagccgcgtcgacacc
gtcgccgaccagggcgagttcgcggtgcgcggcggtatcctcgacctgttccccgccggc
gaggagaacgggctgcgggtcgatttcttcggcgacgagatcgaaagcatccgccgcttc
gatcccgccgaccagcgcagcctcggcccagccaaggcgctgcagctgctgcccgcgtcc
gaaaccctgctcgacgaggcgacgatcaagcgcttccgctcggcctatcgcgacctgttt
ggcgggcagtctaccggcgatccgctgtatcaggcggtcagcgagggccggcggcaggcg
ggcatggaccattggttgccactgttcgaggaacggctcgccaccctgttcgaccatata
gaccccgcgaccccggtgctgcgtgggcaccgcaccgaggcgaccgccgagacgcgcttc
gccgcgatcgccgactatcacgccaaccgcgtcgccgccgaacgcgaatcgccgggcagc
taccgcccgctgacgcccgaaacgctctacctgaccgagacagattggggcgcggccgcc
gccagccgcccgatccacatcgtcacgcccttcgatgttccgcccgcggcgacgatcatc
gacctcgagaccttcgccgcgcgcgatttcacccccgaacgcgccgccgacctcaatgtc
tatcacaaggtcgccgatcatctgtcggacgaacgccgcaaggggcgccggacgatcatc
gccagctattcggtcggcgcgcgcgatcgcctgtcggggttgctgcgcgatcatggcgtg
acctcgctcgcccccgccgacggctggcaggacgcgctcggcaccgcctcggccgagacc
ggcggcgccaccgccatggtcgtgctgccgctcgaccatggcttcgcgtccgacgcgatc
agcctgctcaccgaacaggacatcctcggcgagcgccttgtccggcggcaaaagcgccgc
aagagcgccgatgccttcctcgccgaacttgcgacgctcagcgttggcgacctcgtcgtc
catctcgaccatggcatcgggcgttatgaggggctgacctcgatcccggtgggcaacagc
ccgcatgattgcgtcgctctcacttattcgggcggcgacaagctctatgtcccggtcgaa
aatctagacgtcctgtcgcgctacggcggcgagagcgacggcgtcggtctcgacaagctg
ggcggcgaagcctggcagcgccgcaaggcgcggatgaaggagcggattcgcgagatcgcg
ggcgaactgctcgcgaccgcggcgcagcgcgcgttgcgctcgggcgaattgctcgccgcc
gacgccgcctaccccgcctttgccgaccgcttcccctatcaggaaaccgacgatcaggac
cgcgcgatcggcgacgtgctcgccgacatggcgtcggggcgcccgatggaccggctggtg
tgcggcgacgtcggtttcggcaagaccgaagtcgcgctgcgcgccgccttcgtcgcggcg
atggcgggggtgcaggtcgcactcgtctgtccgaccacgcttctggcgcgccagcatttc
accaacttcgtcgagcgcttcaaaggctttccgatcaacgtcggtcgtctttcgcgcctt
gtcccgggcgccgaggcgcagaagacacgcgacggcctgacgagcgggcagatcgacatc
gtcgtcggcacccatgcggtgatcgcgaaatcggtcgagttcaagaacctcggcctggtc
atcgtcgacgaggaacagcgcttcggcgtcgtccacaaggagcggttgaagcagctcaag
accgacgtccacgtcctgacgctcaccgcgaccccaatcccccgcaccttgcagatggcc
atgtcgggcctgcgcgaactcagcgtgatccagacgccgccggtcgatcgcctggcggtg
cgtacttatgtggcgccgtgggatgcggtcgtgctgcgcgaagcgttgctgcgcgagcat
gatcgcggcgggcagagcttcttcgtcgtgccgcggatcaaggacctgcccgatatcgag
gaattcctgcgcaaccgcgttcccgaaatcaaatatgtcgtcgcgcacggccagatgacc
ccgaccgaggtcgaggaccggatgagcgccttctacgaccgcaaatatgacgtgctgttg
tccaccaccatcgtcgagagcggtctcgacattccgagtgccaataccctgatcatccac
cgcgccgaccgtttcggcctcgcccagctgtatcagctgcgcggccgcgtcgggcgcgcg
aagacgcgcgcctacgcctatctcaccacccccgaacatggcgcgattaccgacaccgcg
gaaaagcggctgaaattgctcggcgacctcgacacattgggggcgggtttccagctcgcg
agccacgacctcgacatccgcggtgccggcaatctggtgggcgacgaacagtcggggcat
atccgcgaggtcggtttcgaactgtaccagtcgatgctggaggaggcgattttggtcgcc
aaggccgagggcgccggaaagctgccaccgcgcgaagccttgtcgccgacgatcaccgtc
gacgcgccgatcctgatccccgaggattatgtccccgatttgccgctgcggatggcgctg
taccgccgcctcaacgacgcgcaggatcgccccgcgctcgacgccttcgcggccgagatg
atcgatcgcttcggcccgctgccgcccgagacggcgaacctcgtccagctgatggagatc
aaggccaatgccaaggccgccggcatcgccaagctcgacgtcggcacgaagggcgccctc
gtcagcttccacggcgaccagttcgccaacgttcccggtctgattgcctatgtcgaaagg
ctgaagggccgcgcgcgcattcgccccgacaacaaactgtcgatcagcggcgattgggtg
agcacgggggcgcggctgaacggcgcactgcaattgtcgaaggggttgggcaagctggcg
aagcaggcgggctag
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