Sphingopyxis sp. OPL5: EEB18_016090
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Entry
EEB18_016090 CDS
T10726
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
spog Sphingopyxis sp. OPL5
Pathway
spog02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spog00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EEB18_016090 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spog03021
]
EEB18_016090 (rpoD)
Transcription machinery [BR:
spog03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EEB18_016090 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Mod_r
Motif
Other DBs
NCBI-ProteinID:
QNO26280
LinkDB
All DBs
Position
complement(3334760..3336787)
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AA seq
675 aa
AA seq
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MATKNTAAETEADTDGPLIDLNEADVKKLIARGKKRGYLTYDELNAALPQDEMSSEQIED
IMSAISDMGINIVESDEDVQEEADAEPDDEVDVSAGSGSVSNPAIEKKKEVVDRTDDPVR
MYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPLTFNAIIEWSNALNNGDMQLR
EIVDLEAMLSKDPAPENLENAEEADDGEISEKTAGVSFKDEDEVEDEPAADGDDEDGEGS
SGKRENFEEDEEDNTLSLAAMEELLKPDALEKFANITKSFKAFSKLQETRLDALSGIGEF
PAASEKKYHKLREDLTAQVEGVQFHNTKIEYLVDQLYSYNRRLTALGGQMLRLAERHKVP
RKAFLDNYVGRELEETWLDAVGSIDKKWAAFAENEAGAVDRIRIEISEIAQAAGMSLTEF
RRVVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRCSRQFLHESGREP
TPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAVQS
NLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKL
KHPSRSRKMRSFLDQ
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaagaacaccgccgccgagaccgaagccgataccgacggcccgctgatcgac
ctcaacgaggccgacgtcaaaaagctgatcgcgcgtggcaagaagcgcggttacctgacc
tatgacgagctgaacgcggcgctgccgcaggacgaaatgtcgtccgagcagatcgaggac
atcatgtcggcgatttccgacatgggcatcaacatcgtcgaaagcgacgaggatgtgcag
gaagaggccgacgccgaacccgacgacgaagtcgatgtcagcgccggttcggggtcggtg
tcgaaccccgcgatcgaaaagaagaaggaagtcgtcgaccgcaccgacgacccggttcgc
atgtacctgcgcgaaatgggcgcggtcgaactgctgagccgcgagggcgaaatcgcgatc
gccaagcgtatcgaggccggccgcgacacgatgatcctcggcctgtgcgaaagcccgctg
accttcaacgcgatcatcgaatggtcgaacgcgctgaacaacggcgacatgcagctgcgc
gagatcgtcgatctcgaagcgatgctgtcgaaggaccccgcgcccgagaatctcgagaac
gccgaagaagccgacgacggcgagatcagcgagaagaccgccggcgtttcgttcaaggac
gaagacgaagtcgaggacgagcccgccgcagacggcgacgacgaggacggcgaaggctcg
tcgggcaagcgcgagaacttcgaagaggatgaggaagacaataccctcagcctcgcggcg
atggaggaattgctcaagccggacgcgctcgagaaattcgccaacatcaccaagagcttc
aaggccttctcgaagctgcaggaaacccgcctcgacgccttgtcgggtatcggtgaattc
cccgcggcgtcggaaaagaaatatcacaagctgcgcgaggacctcaccgcgcaggtcgaa
ggcgtgcagttccacaacaccaagatcgaatatctcgtcgatcagctctacagctacaac
cgccgactgaccgcactcggcggccagatgctacgcttggccgagcgtcacaaggtgccg
cgcaaggccttcctcgacaattatgtcgggcgcgagcttgaggaaacctggctcgacgcc
gtgggttcgatcgacaagaaatgggcggcgttcgccgagaacgaagccggcgcggtcgac
cgtatccgcatcgagatttcggaaatcgcgcaagccgctggcatgagcctgaccgaattc
cgccgcgtcgtgaacatggtccagaagggcgaacgcgaagcgcgcatcgccaagaaggaa
atggtcgaggcgaacctgcgcctcgtgatctcgatcgccaagaaatacaccaaccgcggc
ctgcagttcctcgacctcatccaggaaggcaatatcggcctgatgaaggcggtcgacaaa
ttcgaatatcgccgcggctacaagttctcgacctatgcgacctggtggatccgtcaggcg
atcacccgctcgatcgccgaccaggcgcgcacgatccgcatcccggtccatatgatcgag
acgatcaacaagctcgtgcgctgcagccgccagttcctccacgaaagcggccgcgagccg
acccccgaggaaatggccgagcgtctgtcgatgccgctcgaaaaggtccgcaaggtgatg
aagatcgccaaggagccgatctccctcgaaacgccgatcggcgacgaggaagacagccac
ctcggcgatttcatcgaggacaagaacgccgtcatcccggtcgatgccgcggtgcagtcg
aacctcaaggaaacggtcacccgcgtcctcgcatcgctgaccccgcgtgaggagcgcgtg
ctgcgcatgcgcttcggcatcggcatgaacaccgaccatacgctcgaggaagtcggccag
cagttcagcgtgacccgcgaacgtatccgccagatcgaggcgaaggcgctccgcaagctg
aagcacccgagccgcagccgcaagatgcgctcgttcctcgatcaataa
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