Sphingopyxis sp. OPL5: EEB18_016895
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Entry
EEB18_016895 CDS
T10726
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spog Sphingopyxis sp. OPL5
Pathway
spog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EEB18_016895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spog03019
]
EEB18_016895
Enzymes [BR:
spog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EEB18_016895
Messenger RNA biogenesis [BR:
spog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EEB18_016895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
MerR-DNA-bind
CMS1
Motif
Other DBs
NCBI-ProteinID:
QNO26417
LinkDB
All DBs
Position
3503981..3505360
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AA seq
459 aa
AA seq
DB search
MTTFNDFGLHADINRALAAKDYTVPTPIQVQAIPPLMKGRDLCGIAQTGTGKTAGFSLPS
IHHLLTYPHRPTPRGCRMLVLAPTRELAAQIAQSCRDYGRFTKLTVSTVFGGVPINKQIR
DLSGGVDILVATPGRLLDLIDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRVAKLLPSR
RQNLFFSATMPKEIAHLAEQFLEDPVTVSVTPAATTVEKISQYATFVEQKEKQALLHAVV
ASEDIDRALIFTRTKHGADRVVRHLAGAGIKAMAIHGNKSQSQRTHALQAFRSGDIKLLV
ATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGKAISFIAPDERPYMRDI
ERVTRSKSEPMPLPENFNELVRNLPKPVAGPRDTGSQGRDPGRQRQDAMRGRGGAKPGGD
RGPRRDGAAGEGAEGQRKRRFRPRNKSVGAHKGAVTRVN
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgacgactttcaacgactttggcctgcacgccgacatcaaccgtgcgcttgccgccaag
gattataccgttcccaccccgatccaggtgcaggcgatcccgccgctgatgaagggccgc
gatctgtgcggcatcgcgcagaccggcaccggcaagaccgccggtttctcgctgccctca
atccatcaccttttgacctatccgcaccgcccgaccccgcgcggctgccggatgctcgtg
ctcgcgccgacgcgcgaactcgcggcgcagatcgcgcagagctgccgcgactatggccgc
ttcaccaagctgaccgtctcgaccgtgttcggcggcgtgccgatcaacaagcagatccgc
gacctgtcgggcggcgtcgacatcctcgtcgccaccccgggccgcctgctcgacctgatc
gaccagcgcgcgctgcgcctcgacgatgtcgaaatcttcgtgctcgacgaagccgaccag
atgatggacatgggcttcatccattcgctgcgccgcgtggcaaagctgctgccctcgcgc
cgccagaatctgttcttctcggcgacgatgcccaaggaaatcgcgcacctcgccgaacag
ttcctcgaggatccggtgacggtgtcggtgaccccggcggcgacaacggtcgaaaagatc
agccaatatgcgaccttcgtcgaacagaaggaaaagcaggcgctgctccacgcggtcgtc
gccagcgaggatatcgaccgcgcgttgatcttcacccgcaccaagcatggcgccgaccgc
gtcgtgcgtcatctggcgggcgccggcatcaaggcgatggcgatccatggcaacaagagc
cagtcgcagcgcacccacgcgctgcaggcgttccgttcgggtgacatcaagctgctcgtc
gcgaccgatattgccgcgcgcggcatcgacgtgtcgggcgtcagccatgtgatcaacttc
gaaatcccgaacgtgcccgaacaatatgttcaccgcatcggccgcaccgcgcgcgccggc
gccgagggcaaggcgatcagcttcatcgcccccgatgagcgtccgtatatgcgcgatatc
gagcgcgtcacgcggagcaagtccgagccgatgccgctgcccgagaatttcaacgagctg
gtccgcaacctgcccaagcccgttgcgggtccgcgcgacaccggcagccagggccgtgat
ccgggtcgccagcgccaggatgcgatgcgcggtcgtggcggcgccaagcccggcggcgat
cgtggtccgcgccgcgacggtgcggcgggcgagggcgccgaaggccagcgcaagcgccgc
ttccgcccgcgcaacaagagcgtcggtgcgcacaagggcgcggtaacccgcgtcaactga
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