Sphingopyxis sp. OPL5: EEB18_017580
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Entry
EEB18_017580 CDS
T10726
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spog Sphingopyxis sp. OPL5
Pathway
spog03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spog00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EEB18_017580 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spog03021
]
EEB18_017580 (rpoC)
03400 DNA repair and recombination proteins [BR:
spog03400
]
EEB18_017580 (rpoC)
Enzymes [BR:
spog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EEB18_017580 (rpoC)
Transcription machinery [BR:
spog03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EEB18_017580 (rpoC)
DNA repair and recombination proteins [BR:
spog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EEB18_017580 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QNO26538
LinkDB
All DBs
Position
3651638..3655924
Genome browser
AA seq
1428 aa
AA seq
DB search
MNQLTNFMNPVAKPETFDMIKIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVLEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAIRVLLENLDLEQERADLMEDLATTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMERAGEPGEGMLLADMAEVHQALFT
GAVTLHTKVISRVPQTDEKGNEYLRRFETTPGRMLIGECLPKSHTVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKETVLFADAIMALGFRNAFKAGISFGKDDMIIPASKEGMVDETRALV
KDFEQQYQDGLITQQEKYNKAIDAWSQCGDKVANAMMDEIRAEPKDPKTGRLAPINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVVIEEDCGTERGMEMRAIIQGGSTIASLGERILGRTT
LEDVLDKDGNVLAPVGTLLDEPTTQRIEDAEVQSVKIRSPLVCEATLGVCGKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSNAESISDGTIEYRDMPTI
VDQRGRRLALARSGEVAVIDSEGRERASHKLPYGAHILLKDGDKVKKGERIAEWDPFTMP
LITEKQGVVKYQDLEDTKTLIEQVDEATGIAQRVVIEYRSAGRSKKEDLQPRLTLLDDQS
GEAARYLLAVGTMLSVEDGQEVQAGDVLARVSREASKTRDITGGLPRVAELFEARIPKDN
SVIAKISGRIEFVKDYKAKRKIAIVPEEGDPIEYLIPKSKVLEVQEGDQVKRGDALISGS
PNPHDILDVMGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITEGGDTTL
LPGEQLDYLEMMEYNAKLPKNGRKAEGRPVLLGITKASLQTRSFVSAASFQETTRVLTEA
SVQGKVDSLIGLKENVIVGRLIPAGTGAAMNRVRVTASSKDAALRAAMRAANQVDLIAPA
TAAAEHAAELAQGPEAAIGDDPLGKVQGEDFTTDDVAVIDRPEGEGEE
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagcttaccaacttcatgaacccggtcgcgaagccggaaaccttcgacatgatc
aagatcggcattgcgagccccgagcggatccgttcgtggtcgttcggcgagatcaagaag
cccgaaaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atctttggcccgatcaaggattatgagtgcctgtgcggcaagtacaagcgcatgaaatac
aagggcatcgtctgcgaaaaatgcggtgtcgaagtcacggtgaccaaggtccgccgcgag
cgcatgggccatatcgagctcgccgcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctgctcgatatgcagctcaagcagctcgagcgcgtcctgtac
ttcgaagcctatatcgtcctcgaacccggcctgacgccgctggaaaagttccagctgctg
accgaggacgaactgctcgacgcgcaggatgaatatggcgaagacgcgttcagcgccggc
atcggcgccgaggcgatccgcgtcctgctcgagaatctcgatctcgaacaggaacgcgcc
gatctgatggaagatctggcgacgaccaagtcggagctgaagcccaagaagatcatcaag
cgcctgaaggtcgtcgaatcgttcatcgattcaggcaaccgccccgaatggatgatcctc
gaagtcgttcccgtgatcccgcccgaactgcgcccgctggtgccgctcgacggtggtcgc
ttcgcgacgtcggatctcaacgatctgtatcgccgcgtcatcaaccgcaacaaccgcctg
aagcgcctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagccgtcgatgcgctgttcgacaacggccgccgcggtcgcacgatcaccggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggccgctcggtcatcgtgaccggtccc
gaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcgcgcctcgacgccaagggtctctcgatgaccctgaagcaggcgaagaag
tgggtcgaaaaggaacgcaaggaagtctgggacatcctcgacgaagtcattcgcgagcat
ccggtcctgctgaaccgcgccccgacgcttcaccgcctcggcattcaggccttcgagccc
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgcgctgcgttcaacgcc
gacttcgacggtgaccagatggccgttcacgtaccgctctcgctggaagcccagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctgagccccgcgaacggcaagccgatc
atcgttccgtcgcaggacatggtgctgggtctctattatctgtcgatggaacgcgcgggc
gaacccggcgaaggcatgctgctcgccgacatggccgaagtgcatcaggcgctgttcacc
ggtgccgtgacgctacacaccaaggtcatcagccgcgtcccgcagaccgacgagaagggc
aatgaatatctgcgccgcttcgagacgaccccgggccgcatgctgatcggcgaatgcctg
ccgaagtcgcacaccgtgcccttcgacgtcgtcaaccgccttctgaccaagaaggaaatc
ggcgacgtgatcgatcaggtctatcgtcacaccggccagaaagagaccgtgttgttcgcc
gacgccatcatggcgctgggcttccgcaacgcgttcaaggccggcatctccttcggcaag
gatgacatgatcatcccggcgtcgaaggaaggcatggtcgacgaaacccgtgcgttggtg
aaggatttcgagcagcagtatcaggacggcctgatcacgcagcaggaaaagtacaacaag
gcgatcgacgcctggtcgcagtgcggcgacaaggtcgcgaacgcgatgatggacgaaatc
cgcgccgaaccgaaggatccgaaaacgggtcgtctggccccgatcaactccatctatatg
atggcgcactcgggtgctcgtggttcgcaggcgcagatgaaacagctcgccggcatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggcctgaccgtccttgaatatttcaactcgacccacggcgcccgcaagggcctcgcg
gatacggcgcttaagacggcgaactcgggttatttgacccgccgtctggtcgacgtgtcg
caggattgcgttgtcatcgaggaagattgcggcaccgaacgcggcatggaaatgcgcgcg
atcatccagggcggttcgacgatcgcctcgctgggcgagcgcatcctgggccgtaccacg
ttggaagatgtgctcgacaaggacggcaatgtgctggcgcccgtcggcaccctgctcgac
gagccgacgacgcagcggatcgaagacgccgaagtccagtcggtgaagatccgttcgccg
ctggtctgcgaagcgacgctgggcgtttgcggcaaatgctatggtcgtgacctcgcgcgc
gggaccccggtgaacatcggtgaagcggtcggcgtcatcgccgcccagtcgatcggtgaa
cccggcacccagctgaccatgcgtaccttccacatcggtggcgcggcgcaggtcaacgag
cagtcgaacgccgaatcgatctcagacggcacgatcgaatatcgcgacatgccgacgatc
gtcgaccagcgtggccgccgcctggcgctggcgcgttcgggcgaagtcgcggtgatcgac
agcgaaggccgcgaacgcgcgtcgcacaagctgccctatggcgcgcacatcctgctcaag
gatggcgacaaggtgaagaagggcgagcggattgccgaatgggatccgttcaccatgccg
ctgatcaccgaaaagcagggcgtcgtgaagtatcaggatctggaagataccaagaccctg
atcgaacaggtcgacgaagcgacgggcatcgcccagcgcgtcgtgatcgaatatcgctcg
gcgggccggtcgaagaaggaagacctccagccgcgcctgaccctgctcgacgaccagtcg
ggcgaggccgcgcgctatctgctcgcggtcggcacgatgctgtcggtcgaggacggccag
gaagtgcaggcgggcgacgtgctggcgcgtgtcagccgcgaggcgtcgaagacgcgcgac
atcaccggcggtctgccgcgtgttgccgagctgttcgaagcgcgcattccgaaggacaac
agcgtcatcgcgaagatcagcggtcgcattgaattcgtcaaggattacaaggcgaagcgc
aagatcgcgatcgttccggaagaaggcgatccgatcgagtatctgatccccaagtcgaag
gtcctcgaagtgcaggaaggcgaccaggtcaagcgcggcgatgcgctgatcagcggttcg
ccgaacccgcacgacatcctcgacgtcatgggtgtcgaggcactggccgaatatctcgtc
gccgaaatccaggaagtctatcgactgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcagaaggtcgagatcaccgaaggcggcgacaccacgctg
ctgccgggcgagcagctcgattatctggagatgatggaatataacgccaagctgccgaag
aatggccgcaaggccgaaggtcgcccggtcctgctgggcatcaccaaggcgtcgctgcag
acccgcagcttcgtttcggcggcatcgttccaggaaacgacccgcgtgctgaccgaagcg
tcggtgcagggcaaggtcgactcgctgatcgggctcaaggaaaatgtcatcgtcggccgc
ctcatcccggcgggtaccggtgctgccatgaaccgcgtccgcgtgacggcctcgtcgaag
gatgccgcgctgcgcgccgcgatgcgcgccgcgaatcaggtagacctgatcgcaccggcg
accgccgccgcagagcatgccgccgaactggcgcagggccctgaagcggcgatcggcgac
gatccgctgggcaaggtgcagggcgaggacttcaccaccgacgatgtcgcggtgatcgac
cgtcccgaaggtgagggcgaggagtaa
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integrated database retrieval system
