Sporosarcina sp. ANT_H38: GGGNBK_06500
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Entry
GGGNBK_06500 CDS
T10925
Symbol
addB
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
spoh Sporosarcina sp. ANT_H38
Brite
KEGG Orthology (KO) [BR:
spoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spoh03400
]
GGGNBK_06500 (addB)
Enzymes [BR:
spoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GGGNBK_06500 (addB)
DNA repair and recombination proteins [BR:
spoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
GGGNBK_06500 (addB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
AAA_22
cobW
Motif
Other DBs
NCBI-ProteinID:
XKI11278
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All DBs
Position
1362544..1366041
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AA seq
1165 aa
AA seq
DB search
MSLRFITGRSGAGKTTFIEREIATELERNPMGAPVIVIVPDQMSFSMEHSLSVNFGLKGI
IRAQVLTFKRLAWRILQETGGITRKEVDGFGYRMLVRSVLEDNRDEFKLFRQAASKRGFT
EQIGDLLKEFSRYCLDHQTMSDLHDTLASTGAPRTLLDKAEDLTLLLTKIEEKLGTTYVD
SEGHLALLASQITHSDLLKGADIYIDGFENFTTREYEIVTELMKYANRLTVVLPMEGALT
GFADHELFFNPVRTSLKLRELARAESVEVEDDIYLADALRYQNGDLKHFEAEFDHFPAKQ
QQSEGNVVLIEAVNRRAEIHSVARTIRELMISGKRYKDISILYRQPEKYDELIETIFPHY
DIPVFISQKKPMLHHPLIEFSRSVLEAVTTGWSYESVFRAVKTDLFFPHRETKLLWRDRA
DRLENYILAHGIYGQRWFDDSRWRVKKYRGLEMYTDVQTDEERAMEQELHLIRDEIRDPL
ADFEKRLKRSKTGRDVAEALFLFMEKLNVYDKIIDLRAEEERAGRLLGATEHEQAWNGWI
NVLDQFVLMFGDKNMDSVEAARILDEGFDSLEFARIPPSLDQVTVSTVEVSSLMDIDAVF
VLGVNDGVMPKRVDTEGILSDADREWFSEIGFELAPTSKMKLMDETFMAYRAFTASREKL
YVSYPVADEEGKALIPSLYITRIAQMLPGTETKSAVTDPSELPLGANQFEYISHPRSALP
YVSMKLKEAEQSGVLEHEWRAVMAYYDEDPFWSSVIKHIIRPMNAKNGAERLRSEITEGL
YGESFVSSVSRIESYYSCPFQHYASFGLGLRERTEFTLEAPAIGDLFHAALKWVSDETMR
LGKSWAELTREECWKLARAAVEDISPYFFNRILLSTNRYVYIKRKLMHIIQRTIFSLSTQ
AKATVFKPVAIEAGFGPGEELPALEIPLRRGDLMRLRGRIDRVDATEIGGKNYVRVVDYK
SSAKSLDLTEVYYGLSLQMMTYLDVALENAAEWLGMNADPAGLLYMHIHNPMIRSGSELT
PTLLEAEIAKSYKMRGYLLDNQEVVIGMDADIGRSSSIVPASIKTDGTFAKTSKVLSSDD
LQMMRSFVRTRHQKAGDAMLAGDTRVYPYKLKNKMPCEFCSYRSVCQYDPTDPSAEHRTY
AEMDPELSLDKMRKEVADDAHTRET
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgcgtttcataactggtagatcgggcgccggtaaaacgacgttcattgagcgg
gaaatagctactgaactggaacgaaatccgatgggagcgcctgttattgtcattgtacct
gaccaaatgtcgttctcgatggagcatagtttgtccgttaactttggcttaaaagggatt
atccgcgcacaagtgttgacattcaaacgattggcatggcgtattctgcaagaaacgggc
ggtatcacgcgcaaagaagtagatggtttcggttacaggatgcttgtacgaagcgtcttg
gaagacaatcgggacgagttcaaattgtttcgccaagcagcgagtaaacggggattcacg
gaacaaatcggggatttactgaaggaatttagccgttactgcctcgatcaccaaacgatg
agcgatcttcacgatacgcttgcctcaacaggtgcaccgcgtacattgctagacaaagcg
gaagacctaacattgttgctgacaaaaatcgaagaaaaactgggcacgacctatgtcgat
agtgaaggacatctggctctgctcgcctcacaaattacccactcagacctgctaaaaggc
gctgatatctatatcgatggtttcgaaaatttcaccacgagggaatatgaaatcgtaacg
gaactgatgaaatacgccaatcgactgacagttgtgttgccgatggaaggtgctctcacg
ggctttgcggatcatgaattatttttcaaccctgtacggacttctctcaaattgcgtgaa
ctggcgcgtgctgaatccgtcgaagttgaggatgatatctatttggcggatgcgctacgt
tatcaaaatggggacttaaaacattttgaggcggaattcgaccactttcctgcgaaacaa
caacagtcagaaggcaatgttgttttgattgaagcggtgaatcgtcgtgcggaaatccac
tcagtagcgcgaacaatccgtgagttaatgatttcaggaaagcgttacaaagacatatca
attttgtacaggcagcctgaaaagtatgatgaactgattgaaacgattttcccgcattat
gatattccagtgttcatcagtcagaaaaaaccaatgttgcatcatccgcttatcgagttt
tcacgttctgtgttagaagcggtgacgacaggctggtcgtatgaatcggtatttcgtgcc
gtcaaaacggacctctttttcccgcaccgagaaacgaagttgttatggcgtgatcgagcg
gatagactcgaaaactatattcttgcacatgggatttacggacagcgctggttcgatgac
agccgctggcgcgtgaagaagtatcgcgggcttgaaatgtatacagatgtgcaaaccgac
gaagaacgtgcgatggagcaggagctgcatttgattcgtgatgaaattcgggatccgctt
gctgattttgaaaaacgtctgaaacgttctaaaactggacgtgatgttgcagaagccctg
tttttgttcatggaaaaactaaatgtttacgataaaatcattgatctgcgtgcggaagaa
gagcgtgcaggacgactgcttggcgcaacagaacatgaacaagcatggaatggttggatc
aatgtattggatcagtttgtcctcatgtttggtgataaaaacatggattctgtagaagcg
gcacgaattttggatgaaggatttgactcgctcgaatttgctcgtattccgccgtcgctc
gatcaagtgacagtgtcgactgtcgaagtttcaagtttaatggatattgacgctgtgttt
gttctcggagtaaacgatggcgtcatgccaaaacgggtcgacactgaaggcattttgtcg
gatgcggaccgggagtggttttcggaaataggtttcgaactggcacccacgtcgaagatg
aaattgatggatgaaacgtttatggcatatcgtgcattcacggcatcgcgtgaaaagtta
tatgtatcatatccagttgcagacgaggaagggaaagcccttattccatcgctgtacatt
acgagaattgcgcagatgctgcctggaactgaaacgaaaagcgcagtaacggatccgtct
gaattgccactgggagcgaatcagttcgagtacatcagccatccgcgttctgcacttcct
tatgtttcgatgaagttgaaagaggcggaacagtcgggggtactggagcatgaatggcgg
gcggtaatggcgtattatgacgaggatccattttggtcttctgtcataaaacatatcatt
cgcccgatgaatgccaagaatggtgctgagcggctgcgttcagagataacggaagggttg
tacggggaatcatttgtttcaagtgtgtcacggattgagtcctactacagttgccctttc
cagcattatgcgtcatttggacttggcttgcgcgaacggacggaatttacactggaagcc
ccggcaatcggagatttgttccacgcggctctcaaatgggtgtcagatgaaacgatgcgt
ctcgggaaatcgtgggcagaactgacacgtgaagaatgttggaagcttgcaagagcagca
gtggaagatatttcgccttacttctttaatcggattttattgtcaacgaatcgttatgta
tatattaaacgtaagctgatgcacattattcaacggacgatcttttcacttagtacgcag
gcgaaagcgacagtattcaaacctgttgccattgaagcaggatttggaccaggggaagaa
ctgccggcattggaaattccgctgcgtcgcggtgatctaatgagacttcgtggaaggatt
gaccgtgtcgatgcgactgaaattggcggtaaaaactatgtccgcgttgttgactataaa
tcatctgcaaaaagccttgatttaacagaagtgtattacgggctgtctctgcaaatgatg
acgtatcttgatgttgcgctggaaaacgcagccgagtggctaggcatgaacgcggatcct
gcgggccttttgtatatgcatattcataacccgatgattcgttcaggttctgaattaaca
ccgactcttctggaagctgaaatagcgaaatcctacaagatgaggggctatttgcttgat
aatcaggaagttgtgatcggcatggatgctgatattggcaggtcatcttcaatcgtgcca
gcctcgattaaaacggacggcacatttgcaaaaacgtcgaaagtgctatcatccgatgat
ttgcagatgatgcggtcgtttgtcagaacacgtcatcaaaaagccggagatgcaatgctt
gcgggtgatactcgtgtttatccatacaaattaaaaaataaaatgccgtgcgaattttgt
tcgtatcgatctgtttgtcagtatgatccaacagatccatcagcagaacatcggacttat
gctgaaatggacccagaattgtctctcgataaaatgcgtaaggaggtggcggatgatgca
catacccgtgaaacctga
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integrated database retrieval system
