Sporosarcina sp. ANT_H38: GGGNBK_17270
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Entry
GGGNBK_17270 CDS
T10925
Symbol
srmB
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spoh Sporosarcina sp. ANT_H38
Pathway
spoh03018
RNA degradation
Brite
Enzymes [BR:
spoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GGGNBK_17270 (srmB)
Messenger RNA biogenesis [BR:
spoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GGGNBK_17270 (srmB)
Ribosome biogenesis [BR:
spoh03009
]
Prokaryotic type
rRNA helicases
GGGNBK_17270 (srmB)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XKI13410
LinkDB
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Position
complement(3599000..3600436)
Genome browser
AA seq
478 aa
AA seq
DB search
MTFQNYNLSKEITRALDGLGYSSPTEVQEKVIPAALTKNDLVVKSQTGSGKTAAFGIPIC
EMVNWDENKPQALILTPTRELADQVKEDITNIGRFKRIKAAAVYGKSPYAYQKEELKQKC
HVVVGTPGRVFDHIERGSLVLDQIEYLILDEADEMLNMGFIDQVESIINKLPKNRTTMLF
SATLPEKIGKLSSKYMNNPKNIEIASTVTLTDQIDHSLIIVRDPQKFDLLRDVTVVENPD
SCIIFCRTKDQVDSVTEQLEKLHYTCDKLHGGMMQEDRFSVMDEFKRGEFRYLVATDVAA
RGIDIDSITHVINYDLPVETESYVHRVGRTGRAGKRGKAISFVTPNENHFLDEIEAYIGF
EIQQRNAPSKQAVVVAMGAFTEKIESLPELKKNKNELVNKDIMKLYFNGGKKKKLRAVDF
VGTITNIPGVSAEDIGIIKIQDTVTYIDILNGKGKLVLNEMKTTTVKGKLLKVHKANK
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgacatttcaaaattacaacttaagcaaggagattacacgggcgctagacgggcttggg
tattcttcacctacagaagtgcaggagaaagtaattcctgcggcacttactaaaaacgat
ttagttgtcaaatcacagacgggtagcgggaagacagctgcttttggaattcccatatgt
gaaatggtgaactgggatgagaataaaccacaagcgctaatcttaacgccgacgcgtgaa
cttgcagatcaggtaaaagaagatattacaaacattgggcgttttaagcgtattaaagct
gctgctgtttacgggaaatctccatatgcgtatcaaaaagaagaactgaagcaaaaatgt
catgttgttgtcggaacaccggggcgtgtattcgatcatattgaacgcggttcgcttgta
cttgatcaaattgaatatctgatacttgatgaagctgatgaaatgctaaatatgggcttt
attgaccaagttgaatcgattattaataaattgccgaaaaatagaacgacgatgcttttc
tcagcaacacttcctgaaaagattggaaaactaagcagtaaatatatgaacaacccaaaa
aatattgaaatcgcttcaactgttacattgacggatcaaattgaccattcactaattatc
gtcagagacccacagaaatttgacctgctacgcgatgtgacggttgttgaaaatccggat
agttgtattatcttctgtcggacgaaagatcaggtggacagtgtgactgaacagcttgaa
aaactacactatacatgcgataaattacacggcggcatgatgcaagaagaccgattctct
gttatggatgaattcaagcgtggtgagttccgctacctggttgcaacagatgttgctgca
cgtggtattgatattgacagcattacgcatgttattaactacgaccttcctgtggaaaca
gaaagctacgtgcatagagtaggtagaacgggacgagcaggtaagagagggaaggcgatt
tcattcgtcacacctaatgaaaatcacttccttgatgagattgaagcttacatcggattt
gaaattcaacaacgcaatgcgccatcgaaacaggcagttgtagtagcaatgggggcattc
accgaaaaaatagaaagccttcctgaattgaaaaagaacaaaaatgaattagtaaacaaa
gatattatgaagctctattttaacggcggtaaaaagaaaaagctccgcgctgttgacttt
gtcggtacaataacaaatattccgggcgtatctgcagaagacatcggtatcattaaaatt
caggacactgtgacgtatatagatatcctgaacggcaaaggtaagctggttttgaatgaa
atgaaaacaacaacagttaaagggaaattattgaaagtgcataaagcgaataaataa
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