Sporosarcina sp. ANT_H38: GGGNBK_19470
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Entry
GGGNBK_19470 CDS
T10925
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
spoh Sporosarcina sp. ANT_H38
Brite
KEGG Orthology (KO) [BR:
spoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spoh03009
]
GGGNBK_19470 (rlmD)
Enzymes [BR:
spoh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GGGNBK_19470 (rlmD)
Ribosome biogenesis [BR:
spoh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GGGNBK_19470 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
PrmA
Methyltransf_23
Methyltransf_11
Cons_hypoth95
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
XKI13811
LinkDB
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Position
complement(3962692..3964086)
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AA seq
464 aa
AA seq
DB search
MTSIKEVTHVTEIDHLDGKGNGRAMIWRESDRGSNPRKLKLTIPQTLIGESVQVVIEDSE
KRRRKVMFEEILVASPERTVAPCPHFELCGGCVWQHWTYEGQLKHKTEQVKNALLSEGFD
PELVLDTIGMDDPWHYRNKMEFTFSIEGDMGMHEQGDFRKIIPLETCLIAGRNMVDGMLE
VGEWVKEFGLKGYDKEAHVGLLRHLMVRESFATGEMMLALFATETPDGELASAVENLVER
ITKKFPNVKSLLWLVNTDWADRTQSEDTHLLAGRDFIYDEMAGYRYRLWFDTFFQTNPKQ
AQKLVDLALEMGKPKEDEKMIDLFCGVGTFSLPFAARVKELAGIEIVETSIESAKRNAID
NDLHNTTFLARDARTGLDEMHDQFGFADILLVDPPRCGAGGRVMRRIGRSQPKRIVYVSC
CPETFATDIAELLPFGYKLQTVQPVDLFPHTVHVECVALLELEK
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
ttgactagtataaaagaagtaacgcacgtcacggaaattgaccatttagatggtaaaggc
aatggacgagctatgatttggcgtgagagtgatagaggttccaatcctagaaagctgaag
ctgacgattccacagacgctaataggagagtcagtgcaggtcgtcatcgaagattccgaa
aaacgaagaagaaaagtaatgtttgaagagattctagtcgcaagccccgaacggacggtt
gcgccttgtccgcattttgagctttgcggaggttgtgtatggcaacactggacgtatgaa
gggcaattgaagcataagaccgagcaagtgaagaacgcattgttaagtgaaggattcgat
cctgaactagtattggatacgatcggcatggatgacccttggcattatcgaaataagatg
gagttcacgttttcgattgaaggggatatgggaatgcatgaacaaggggatttccgcaaa
atcatcccactggaaacgtgtctaattgcaggccgaaatatggtcgatggcatgttggaa
gtcggcgaatgggtaaaagagttcggccttaaaggctacgacaaagaggcacatgttggg
cttcttcgtcatttgatggtgcgggaatcgtttgcgaccggtgaaatgatgttggcattg
tttgctacagaaacgcctgacggtgaattggcgtctgcagttgaaaatcttgtcgagcgt
atcacgaagaagttcccgaatgtgaaaagtcttctttggcttgtaaacacagactgggct
gatcgcacacaatccgaggatacgcatctgttagcggggcgtgattttatttatgatgaa
atggcaggctatcgctatcgtctttggtttgatacattctttcagacgaacccaaagcaa
gcccaaaagcttgtggaccttgcgttggaaatgggtaaaccaaaggaagacgagaaaatg
atcgacctattttgtggtgtcggcacgttctcattaccattcgctgcacgtgtgaaggaa
ttggcgggaatcgagattgtcgagacatcgattgaatctgcaaaacgcaatgctatcgat
aatgatttgcataacacgacattccttgcccgtgatgcacgaacgggactagatgagatg
cacgatcagttcggatttgctgatattctgttggttgacccaccacgttgcggagctggc
gggagagtgatgcgccgcattgggcgttcccaaccaaaacggatcgtctatgtatcttgc
tgccctgagacattcgcaacggacatagctgaattgctaccattcggctataagcttcaa
actgtgcaacctgttgatctttttccgcatactgtacatgtggagtgtgtggctttgttg
gagttggagaaataa
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