Sporosarcina sp. ANT_H38: GGGNBK_21870
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Entry
GGGNBK_21870 CDS
T10925
Symbol
srmB
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spoh Sporosarcina sp. ANT_H38
Pathway
spoh03018
RNA degradation
Brite
Enzymes [BR:
spoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GGGNBK_21870 (srmB)
Messenger RNA biogenesis [BR:
spoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GGGNBK_21870 (srmB)
Ribosome biogenesis [BR:
spoh03009
]
Prokaryotic type
rRNA helicases
GGGNBK_21870 (srmB)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XKI14246
LinkDB
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Position
complement(4418553..4420079)
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AA seq
508 aa
AA seq
DB search
MTNFSELNISESTQRALSKMGFEEATPIQEGTVRFGMEGRDVIGQAQTGTGKTAAFGIPI
IEKVDVRNTAVQALVIAPTRELAIQVSEEIYRIGADKRVRILSVYGGQEIGRQIRALRNN
PQIIVGTPGRILDHIKRKTLKLDGVQTLVLDEADEMLNMGFIEDINTILASVPAERQTLL
FSATMPGPIRKIAETFMRNPEMVKIKSKEMTVENIEQFFVKSQEREKFDILSRLLNVQQP
ELAIIFGRTKRRVDELSQALGIRGYIAEGIHGDLTQAKRMSVLKQFKEGKVDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAITFVTPREMGYLRIVEETTK
KQMTPLNPPSSDEAILGQQRVAVEQLTEIVTKNELSDYTHLAADLLEKFEAKDLVAAALR
SLTREPNDTPVSISEERPLPSRGNSRGGGGGGYKGNRSGGRPSSGGGGRGYGGGARRSGG
SGGNAPSGSRDGARRESSSRSRNTKSDR
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
ttgactaatttttcagaattaaacatcagtgaatcaacacaacgcgcactttctaaaatg
gggtttgaagaagcaacaccaatccaagaaggtactgtccgttttggtatggaaggtcgc
gacgttatcggccaggcacaaactggtactggtaaaacagctgcattcggtattccgatc
attgaaaaggttgatgttcgaaacactgcagttcaagcacttgtaattgctccgacacgc
gaattggctattcaggtttctgaagaaatctacagaattggtgctgacaaacgtgtacgc
attctttctgtttacggtggacaagaaatcggtcgtcaaatccgtgcgttgcgcaacaac
ccacaaatcatcgttggtacgccaggacgtattcttgaccatatcaaacgtaaaacattg
aagcttgacggcgtacaaacacttgtacttgacgaagcagatgaaatgttgaacatgggc
ttcattgaagacatcaacacaattcttgcaagcgtaccagctgaacgccaaacgcttcta
ttctcagctactatgcctggaccgatccgcaaaattgcagaaacgttcatgagaaaccct
gaaatggttaaaatcaagtctaaagaaatgactgttgaaaatatcgaacagttcttcgtt
aaatcacaagaacgcgaaaagttcgacattctttcacgtcttcttaacgttcaacagcct
gaacttgcaatcatcttcggacgtacgaaacgtcgcgttgacgaactatctcaggcacta
ggtatccgcggatacattgctgaaggaattcacggcgacttgactcaagcgaaacggatg
tctgtccttaagcaattcaaagaaggtaaagttgatatccttgttgcaactgacgttgcg
gcacgtggactcgatatttcaggcgtaacacacgtttacaacttcgatattccacaagat
cctgaaagctatgttcaccgtattggtcgtacaggacgcgcagggaaaagtggagtagca
attacattcgtaacaccacgtgaaatgggttaccttcgtattgtagaagaaacaactaaa
aaacaaatgactccattgaacccgccatcttctgacgaagcaattcttggtcagcaacgt
gtggctgtggaacaacttactgaaattgttactaaaaatgaattgagtgattatacacat
cttgcagctgatttgcttgagaaattcgaagctaaagatctagttgcagcagcacttcgt
tcattaactcgcgaaccgaatgatacacctgtatcaatttcggaagagcgtccattacca
tcacgcggaaattctcgcggcggcggtggcggtggttataaaggtaaccgtagcggcgga
cgtccatcaagcggtggcggcggtcgtggttatggcggcggagctcgtcgtagtggcgga
agtggcggcaacgcaccaagcggtagccgtgacggagctagaagagaaagcagcagtcgt
tcacgtaacactaaatcagatcgttaa
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