Spongiibacter sp. IMCC21906: IMCC21906_00171
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Entry
IMCC21906_00171 CDS
T03945
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
spoi
Spongiibacter sp. IMCC21906
Pathway
spoi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IMCC21906_00171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spoi03400
]
IMCC21906_00171
Enzymes [BR:
spoi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
IMCC21906_00171
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
IMCC21906_00171
DNA repair and recombination proteins [BR:
spoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
IMCC21906_00171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
AKH67865
UniProt:
A0A0F7LX57
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Position
complement(191853..192671)
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AA seq
272 aa
AA seq
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MPELPEVETVCRGVSPHLLGRAIRAVTVRNASLRWPVPDDLGDVLIGQQVLSVQRRAKYL
LLEFASGWLIIHLGMSGRLYLVEADAAVAKHDHIDWLLDSGRVLRYTDPRRFGAVLWMPG
TEYSQHVLLSHLGPEPLSEDFTPEYLQTKAKGRKQPIKSFLMDGKIVVGVGNIYANEALF
MAGIHPNRSAGSVSRARLLLLVQAIKQVLANAIIQGGTTLKDFVGGDGKPGYFKQELQVY
GRGGQGCPACGAVLKEVRLAQRTTVYCGRCQR
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagttacccgaagtcgaaaccgtatgccgaggcgtgtcaccgcatttattgggg
cgcgctattcgtgccgttaccgtgcgcaatgccagtttgcgatggccggtgccagatgac
ttgggcgatgtgttgatagggcagcaagtgctatctgttcagcgacgggcaaaatacttg
ctccttgagtttgccagcggttggctcattatccatttgggcatgtcggggcgactgtat
ttggtagaggccgatgcggcagtggccaagcacgatcatatcgactggctgctcgatagc
ggtcgggtattgcgctatacagatcctcggcgctttggcgcagtactgtggatgccagga
acggaatacagtcagcacgtactgttgagtcatctaggccctgagccgttgtcggaggat
ttcacccccgagtatttacagaccaaagctaaaggtcgaaaacagcccatcaaaagcttt
ttgatggatggcaagatagtggtcggggtgggtaatatctatgcgaatgaagcgctgttt
atggcgggcattcatcccaaccgcagtgcgggttctgtgagccgtgcccgtttgctgctg
ttggtgcaggctattaaacaggtactagcaaacgccattattcaaggcggtaccacctta
aaagattttgtcggcggcgatggtaagcccggttattttaaacaagaactacaggtttat
ggccgaggcgggcagggctgccctgcatgcggagcggttttgaaagaggtacgcctcgct
cagcgaacaaccgtatattgtggtcgctgccagcgttaa
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