Spongiibacter sp. IMCC21906: IMCC21906_00323
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Entry
IMCC21906_00323 CDS
T03945
Name
(GenBank) DNA/RNA helicase, superfamily I
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
spoi
Spongiibacter sp. IMCC21906
Pathway
spoi03420
Nucleotide excision repair
spoi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IMCC21906_00323
03430 Mismatch repair
IMCC21906_00323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spoi03400
]
IMCC21906_00323
Enzymes [BR:
spoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IMCC21906_00323
DNA repair and recombination proteins [BR:
spoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IMCC21906_00323
MMR (mismatch excision repair)
Other MMR factors
IMCC21906_00323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
THB
Motif
Other DBs
NCBI-ProteinID:
AKH68016
UniProt:
A0A0F7LZ91
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All DBs
Position
356685..358850
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AA seq
721 aa
AA seq
DB search
MDVSYILDDLNDAQRDAVTADSPGTLVLAGAGSGKTRVLVHRIAWKIQVENLSPYSILAV
TFTNKAAKEMRGRIESLLGTGLHGGMWVGTFHGLAHRLLKAHAPEAKLPDNFQILDSDDQ
LRLLKRIHKELSLDDARWPPRQSCYFINGHKDEGRRAAHIDDAGGDLYIKTMLQVYRRYE
EICLQQGVVDFAELLLRALELWRDNPAVLDHYQQRFKHVLVDEFQDTNAVQYAWLRLLAG
KGMAITAVGDDDQSIYGWRGARIENIQQFSKDFSDTQIVRLEQNYRSTANILQAANAVIV
NNSQRLGKELWTSGEEGDKIVLFSAFNEQDEARYITDRIESLLKEDYRRSDIGILYRSNA
QSRVLEEFLIRAGLPYRIYGGQRFYDRLEIKNALAYLRLIALRDDDTAVERIINTPTRGI
GNRTVEILRDYARQHQLSLWKAAAAIVQQDLLAARASNALRNFLSLIENLAQQTQEMGLD
AQVDHIIEHSGLIPFHEKEKGEKGQARVENLHELVSAARSYQAEDEEADILRQFLDDAAL
DAGDKQADEHEDCVQLMTLHSAKGLEFPVVFIAGVEENLFPHKMSMEDPIRLEEERRLAY
VGITRAEQKLFLTYAESRRLHGQENFNSLSRFIREIPNELIDEVRINNTVSRPSSFASST
ISQQAAADSGIALGQRVLHSIFGAGIVLSFEGQGASARVQVNFEDEGSKWLVLQYAKLEL
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttatattctcgatgatctcaacgatgcccagcgcgacgcggtaacagcc
gatagccccggcaccctagtgcttgccggtgccggcagtggcaaaacccgtgtgctggta
caccgcattgcctggaagattcaggtcgaaaacctgtcaccctacagcattcttgccgtg
acctttaccaataaggctgccaaggaaatgcggggccgcattgaatcactgctgggcact
ggcttgcatggcggtatgtgggtgggcacctttcacggtctggctcaccgcttactaaag
gcccacgcacctgaggccaaactgcctgataactttcagatcttggacagcgacgatcag
ctacggttgctaaagcgtattcacaaagagctgagccttgatgacgcgcgctggccaccc
cggcaatcttgctattttatcaacggccacaaagatgaaggccgtcgagccgcgcatatc
gatgatgccggtggcgatctgtatatcaaaaccatgctgcaagtttatcgccgctatgaa
gagatctgcctacaacaaggcgtggtggattttgccgagctgctgctgcgggcattagag
ctatggcgagataaccccgctgtgctggatcattatcaacagcggtttaaacacgtgctg
gtagacgagtttcaagacaccaacgcggttcagtatgcttggctgcgactgctagcgggt
aagggcatggccattaccgcagttggtgacgacgaccagtcgatttatggctggcgtggg
gcgcgaattgaaaatattcagcagttctccaaagacttcagcgatacgcaaattgtgcgg
ctggaacaaaactaccgctccaccgcgaatattctacaggctgccaacgcggttattgtc
aataacagccagcggctgggcaaagagctgtggaccagtggtgaagaaggcgacaagatc
gtgctcttctctgcctttaatgagcaggacgaagcccgctatattaccgatcgcattgag
tccctactgaaagaagattaccgacgttcagacattggtattctctaccgcagcaacgcc
caatcccgggtactggaagaattcctgattcgggccgggctaccctatcgcatctatggc
ggtcagcgattctatgatcgtttagaaattaaaaacgccttagcgtatttgcggctaatc
gccctgcgagatgatgacacggcagtggagcgcatcattaacacgcccacccgcggcatt
ggcaaccgcaccgtagaaattcttcgggattacgcccgtcaacatcaattatcgttgtgg
aaggctgccgctgccattgtccaacaagacctgctcgccgccagagccagcaatgccctg
cgtaactttctgtccttaatcgaaaacttagctcaacaaacccaagaaatggggctggat
gcacaagtcgatcacatcattgaacattccggcctgattccctttcacgagaaagaaaaa
ggcgaaaaaggccaggcccgggtagaaaacctccatgagctggtcagcgctgcccgtagc
tatcaggccgaagacgaagaagccgacatcctccgccagtttctggacgatgccgcgctg
gatgccggcgacaaacaagctgacgagcacgaagactgtgtgcagctcatgacgctgcac
tcggccaaaggtttggagtttcccgtggtctttatcgccggggtggaagaaaacctcttt
ccccacaaaatgtcgatggaagaccccatacgtttagaggaggagcgccgactggcctat
gttggcattacccgagctgaacaaaaactgtttctgacttacgccgaatcccgtcgtctg
cacggccaggaaaatttcaacagcctctctcgctttatccgtgaaatccccaacgagctt
attgacgaagtgcgtataaacaataccgttagtcgccccagcagttttgccagctcaacc
atttctcagcaagccgccgctgacagtggtattgccttaggccaacgggttttacacagt
atttttggggctggcatcgtcctcagctttgaaggccaaggcgccagcgcccgggtacaa
gtcaattttgaagatgaaggtagcaagtggctggtgctgcaatacgccaagctagaactg
ctttag
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