Spongiibacter sp. IMCC21906: IMCC21906_00942
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Entry
IMCC21906_00942 CDS
T03945
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
spoi
Spongiibacter sp. IMCC21906
Pathway
spoi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IMCC21906_00942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spoi03400
]
IMCC21906_00942
DNA repair and recombination proteins [BR:
spoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IMCC21906_00942
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IMCC21906_00942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
AAA_23
nSTAND1
RsgA_GTPase
nSTAND3
cobW
DnaJ_CXXCXGXG
NACHT
AAA_25
Viral_helicase1
DUF1451
T2SSE
Motif
Other DBs
NCBI-ProteinID:
AKH68622
UniProt:
A0A0F7M2T5
LinkDB
All DBs
Position
complement(985296..988202)
Genome browser
AA seq
968 aa
AA seq
DB search
MYHTPGRIMLGLPFEEGSCMAQIIVRGARTHNLKNIDLDIPRDKLVVITGLSGSGKSSLA
FDTLYAEGQRRYVESLSTYARQFLSMMEKPDVDHIDGLSPAISIEQKSTSHNPRSTVGTI
TEIYDYLRLLFARAGEPRCPDHGEPLAAQTISQMVDTVLALPEGSKMMLLAPVIQNRKGE
HLHILEKLRSQGFVRARIDGITCDLDDLPDLDKKKKHNIEVVVDRFKVRNDLAQRLAESF
ETALELTDGTATVADMDNPKTAEIVFSAKFACRHCGYSLAELEPRLFSFNSPLGACSSCD
GLGVRQFFDESRLVQHPEASLSTGAIRGWDRRSVYYFHMLTSLADHYGFDIDEPFENLST
EHQKKILHGSGNDEISFTYVNDRGDSFQRRHRFEGVIPNMERRYRETESQTVRDELAKLL
STHSCPDCKGTRLRREARNVFIDERTLPAVAALPVGEAHRYFSSLELEGRRAKIAEKILK
EINDRLRFLVDVGLNYLSLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQ
RDNERLLGTLRHLRDIGNTVIVVEHDEDAIRTADHIIDIGPRAGVHGGQVVAEGDLESIL
SCKDSLTGQYLSGAKEIRTPDQRNKPDWDKAISLTGASGNNLKTVDLKLPLGLMTCITGV
SGSGKSTLINHTLYPIAATELNGATTLTPAPYKNIQGMDQVDKCIDIDQSPIGRTPRSNP
ATYTGIFTPIRELFAGTEEARSRGYKVGRFSFNVKGGRCEACQGDGVTKVEMHFLPDIYV
SCEVCQGKRYNRETLDILYKGQNIHQVLEMTIEDACGFFENVPSIFKKLQTLMDVGLSYI
RLGQAATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFEDIQQLLAVLHRLRDH
GNTVVVIEHNLDVIKTADWLIDLGPEGGSGGGEIIAEGSPEDVAEMTQSHTGRFLAPLLA
NIRSAKIA
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
gtgtatcacacacccggccgtataatgctgggtttaccttttgaagaaggcagttgtatg
gctcagattattgttcgcggcgctcgcactcataacttgaagaacattgatctggatatc
ccccgcgacaagctagtggttataaccgggctgtctggctcggggaaatcatcactggcc
ttcgatacgctatatgcggaggggcaacggcgctatgtcgagtcgctatcgacttacgcc
agacagtttttatccatgatggaaaagcccgacgtcgatcatatcgacgggctctctccc
gccatatccattgagcaaaaatcaacctcccacaacccccgctcaaccgtaggcactatc
accgaaatatacgactacctgcgactgctctttgcccgagctggcgaaccccgctgtccg
gaccatggcgagccactggcagcgcaaaccatcagccaaatggtcgacaccgttctcgcc
cttcccgaaggcagcaagatgatgctgctagcgccggtaatacaaaaccgcaaaggggaa
caccttcatatattggagaaattgcgcagccagggctttgtacgtgcccggatcgacgga
attacctgcgatttggatgacctccccgatttagacaaaaagaaaaagcacaacatagaa
gtggttgtggaccgattcaaggttcgcaatgatctcgcccagcgcctagcggaatccttt
gaaactgccctggaactcaccgacggcaccgccaccgttgccgacatggacaaccccaag
acggcagagattgtcttctcagctaaatttgcctgccgtcattgtggctacagccttgca
gaattagagcctcgactcttctcttttaacagcccgctaggtgcctgcagcagctgcgat
ggcttgggggtacgtcagttctttgatgagtcgcgactggttcaacatcccgaagcctca
ctatccaccggtgctattagaggctgggaccgtcgcagcgtatattacttccatatgctc
acctccctggcagaccattatggctttgatatcgacgagccttttgaaaacctctccacc
gaacatcagaaaaaaattctacacggcagcggcaacgacgaaattagctttacctatgtc
aatgatcgaggcgatagctttcagcgccgccatcgctttgaaggcgtcatacccaatatg
gaacgacgctaccgggaaaccgaatcccaaacggtgagagacgaactggccaaactccta
agcacccattcttgccccgactgcaaaggcactcgcctgcgccgcgaagcccgcaatgtc
tttattgacgagcggaccctacccgccgtagcggctctgcccgtgggcgaagcgcaccgg
tatttttctagcttagaactggaaggtcgccgcgccaaaatcgccgaaaaaattcttaaa
gagattaatgatcgcttgcggttcttagtcgacgttggcctcaattatctctcgctggac
cgcagcgcagatacgctttccggaggagaagcccaacgcattcgcctggccagtcaaatt
ggcgcgggacttgttggtgttatgtatattctcgacgagccctccatcggccttcatcaa
cgcgataacgagcggctacttggcaccctccgtcaccttagagatatcggcaacactgtg
atcgttgtagaacatgatgaagacgccattcgtaccgccgaccacattattgatatcggc
ccccgtgctggcgttcatggcggccaagtcgttgccgaaggcgatctagaaagtatcctt
agctgcaaagattccctaactggccaatacctctccggtgcaaaagaaattcgtacgcca
gaccagcgcaacaaacccgactgggacaaagccatttcattaacaggtgccagcggtaac
aacctaaaaaccgtagatttaaagcttcctcttggcttgatgacctgtattactggtgtt
tctggctcagggaaatccaccttgatcaatcacaccctctaccccattgccgcaacggag
ttaaatggtgccaccaccttaacccctgcgccctacaaaaatatccaaggcatggatcaa
gtcgacaaatgtatcgatattgaccaaagtcctattggtagaacaccgcgctctaacccc
gctacctacacaggtatattcacgcccatcagagagttgtttgccggcaccgaggaagcg
cggtcccgcggttacaaagttggccgttttagttttaacgtaaaaggtggccgctgcgag
gcttgccaaggcgatggtgttaccaaagtagaaatgcactttctgccggacatctatgtg
tcctgcgaagtctgtcagggcaaacgttacaaccgggaaaccttggacattctgtataaa
ggccagaatatccaccaagtattggaaatgaccatagaagacgcctgcggattttttgaa
aatgtcccctctattttcaaaaaattacaaacactaatggacgttggcttaagttatatt
cgacttggtcaggcagcaaccaccttgtcagggggcgaagctcaacgggttaagctggca
agagagctatcaaaacgcgataccggtaaaaccttatacattctagatgaacccaccacc
ggacttcacttcgaagacatccaacaactcttggcggtactccaccgtttaagagatcac
ggcaacaccgttgttgtcatcgaacataatctagatgtcattaaaaccgccgactggctg
attgaccttggccccgaaggcggctctggtggcggtgaaatcattgcagagggcagccca
gaagacgtggccgaaatgacgcaatcccacacgggccgctttttggctccactgctggca
aacatcagatccgcaaaaatagcttaa
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