Spongiibacter sp. IMCC21906: IMCC21906_01776
Help
Entry
IMCC21906_01776 CDS
T03945
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
spoi
Spongiibacter sp. IMCC21906
Pathway
spoi02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
spoi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IMCC21906_01776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spoi03021
]
IMCC21906_01776
Transcription machinery [BR:
spoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IMCC21906_01776
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
PhyR_sigma-like
HTH_23
HTH_7
GerE
HTH_SB
HTH_24
HTH_28
HTH_11
HTH_29
TPR_AlgK
HTH_10
Sigma70_ECF
HTH_Tnp_ISL3
Fe_dep_repress
SpoIIID
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
AKH69451
LinkDB
All DBs
Position
complement(1903859..1904416)
Genome browser
AA seq
185 aa
AA seq
DB search
MSQLPPDITPPGYAIPATRDLDKLYREHQPWLLNWLRAKLSCPFDAGDMSQDTFLRLLSV
DLASLREPRAYLLVIANRLMINRYRRKKVEADVLQQVAYLLDTSNDKGPAEIIAARDLLH
RVLLMLTEELPKKPRQAFLMARVGGMAYRQIAKRLDVSESSVKQYIAKALMHCHKSLYNE
FAEAD
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagctcccgcccgacataacgccacccggatatgccatcccggccacccgggat
ctggacaagctgtaccgcgagcatcaaccctggttgctcaattggctgcgggccaagctc
agctgcccttttgacgcaggggatatgagtcaggacacgtttctgcgtctgttgtctgtt
gatctcgccagcctcagagaaccccgagcttatctgctggtgatagccaaccggctgatg
atcaaccgctaccgccgtaaaaaagtagaagccgatgttctccagcaggtggcttatctg
ctggacaccagtaacgacaaaggcccagcagagatcattgccgccagagatctgctccac
cgggtgctactgatgttgaccgaggaactgccgaaaaagccccgccaggccttcctgatg
gcgcgagttggcggcatggcctaccgacaaattgcaaaacgtttggacgtatccgaaagc
agcgtcaagcagtacatcgccaaagcgttaatgcattgccacaagagcttgtacaacgag
tttgcggaggccgattga
DBGET
integrated database retrieval system
