Spongiibacter sp. IMCC21906: IMCC21906_01932
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Entry
IMCC21906_01932 CDS
T03945
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
spoi
Spongiibacter sp. IMCC21906
Brite
KEGG Orthology (KO) [BR:
spoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spoi03019
]
IMCC21906_01932
Enzymes [BR:
spoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IMCC21906_01932
Messenger RNA biogenesis [BR:
spoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IMCC21906_01932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
HA2_N
NACHT
nSTAND3
ResIII
NTPase_1
SLFN-g3_helicase
T2SSE
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
AKH69606
UniProt:
A0A0F7M3A6
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All DBs
Position
2074403..2078299
Genome browser
AA seq
1298 aa
AA seq
DB search
MPESSLNSLFDALNECCLIDQFPLRRELLRLKKAALEPEPRQKALAKLQARLDRSVANRL
ARLNSVPVVSYPEDLPVSGRVDDIKAAIANNQVVIVAGETGSGKTTQIPKVCLELGRGVA
GLIGHTQPRRLAARSVAQRLADELATPLGESVGFQIRFQDVSNPRTHIKVMTDGVLLAAI
NQDRFLNQYDTIIIDEAHERSLNIDFLLGYLKTLLPKRPDLKLIITSATIDVERFSEHFN
NAPVIEVSGRNYPVEYRYRPMEEAESGNDLPAAIENVLNELQRGGESRRGDVLVFLSGER
DIREVHRHLKRSSNDNLEVLPLYARLSNKEQQRIFDLRGRRGWRVVLATNVAETSLTVPG
IHFVIDAGTARISRYSVRSKVQRLPVEAISQASANQRAGRCGRLAPGIAYRLYSEEDFQR
RPEFTEPEIQRTNLAAVILQMLQLRLGEIEKFPFINPPDRRLINDGYGLLQELGAVAGRS
LTPLGKRLAQLPADPRIGRMLLAAAEQSCLHEMLIIASALSIQDPRERPADKQQAADEKH
RRFSHPESDFMAYLALWDYAEEQRQELSSNQWRKLCQKEFFSWTRMREWREVHHQLTLLC
RQMKLVKNQEPADYQRLHQALLPGFLSQIAFKTEERDYLGARNRKLRIFPGSALFKKSPK
WIVAAELAETSQLFARCVARIEPEWVLGVNDDLLKRRYYEPHFQAKTGRVVAFEQTLLFG
LQIRDKLKVNYAPINPKESREIFIRQGLVEGRYRGKAAFFVHNRALIDDIVGLEDKTRRR
DILASDEELFRFYDERLPETVVSARHLESWLKRDAPKNALYLGRGDAMRIADIDAGEAQF
PDVLHWQENQLPLRYHFEPGHPADGVTVLLPMALLDKVPEGRLQWLVPGLLREKSIALVK
ALPKAQRKQLVPVPDYVDRALETLSPSDTSLLEALSIALKRISGVEIDLQSWSAQSLDDY
YRMNIRVLDDAGETLAESRNLNSLRSKLSHRVQSSIAKETGKGFESREVDCWDFGALAVE
HQFKQSGATLTAYPCLRLRKQTVELALAESLQEAQRESLAGVQQLLLLRLGQQTKGLRKQ
LFSNNAQQLQFAACQQDRRQWIDDTLMAAAREAFGLSTECLPRNEEAFESIWQRGRSEFV
PVAERYDVLLGEILGLYSDICRRMKSLNSLAWIQSINDIRQQLSSLFSKGFIRDCSLQEL
AQFPRYLKAVLQRMDKLDGNFQRDRQCTLIIEPMQEKVDQVLLKDPLAMTLADFAEFRWM
LEEFRVSLFAQQLGTAMPVSEKRLKNAWKALAPLVTKA
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgccagaatcctctctgaactccctgtttgatgccttgaatgaatgctgtcttattgac
cagttcccattgcgccgggagttactgcgtttaaagaaagccgcccttgagcctgaaccg
cgccaaaaggcattggcaaagctgcaagcacgcttggaccgctcagtggccaaccgcctg
gctcggctaaacagcgtacccgtcgtcagctaccctgaagatttacccgtcagtggccgg
gttgacgatattaaagcggccatcgccaataaccaggtcgtgattgttgccggggaaacg
ggctcgggtaaaacgacccaaatccccaaggtctgccttgagctgggccgaggcgtggcg
ggtttgattggtcacacccaaccccggcgcttggccgctcgcagcgttgcccaacgtctt
gccgatgagttggcaacgccgctaggggagagcgtgggttttcaaattcgctttcaggat
gtcagtaatccgcgcacccacatcaaggtgatgaccgacggggtcttgctggcggcgatt
aatcaggatcgttttcttaatcaatacgacaccatcattattgacgaagcccacgagcgc
agtctcaatatcgattttttgctgggttatcttaaaaccctgctgcctaagcgccctgat
ttgaaactgatcattacctcggcgaccattgatgttgagcgtttctctgagcattttaat
aacgccccggtgatcgaagtatcaggtcggaattacccggtggagtatcgttatcgacca
atggaggaggcggaatctggcaatgatctgcccgcagctatcgaaaacgtgctgaacgag
ttacagcgcgggggcgagtctcgccggggggatgtcctggtgtttctcagtggtgaacgg
gatattagagaagttcaccgacatttaaagcgcagcagcaatgacaacctggaagtgttg
ccactgtatgcccgtttaagtaataaagaacaacagcgcatttttgatttgcggggacgg
cggggttggcgcgtcgtgttggcgacgaatgttgccgaaacctccttgaccgttcccggt
attcattttgtgattgatgccggtaccgcccgcatcagccgctacagtgtgcgcagtaaa
gtgcagcggctgccagtagaagcgatctcccaagccagtgccaaccaacgggcggggcgt
tgtggccgtcttgcccccggtattgcttatcgcctatacagcgaagaagattttcagcgg
cggcctgagtttactgagccggaaattcagcgcactaatttggcggcggttattttgcaa
atgctgcaactgcgtctgggcgagatagagaaatttccatttattaacccccctgaccgc
cgcttgattaatgatggttatggcttgttgcaggaactgggggcggttgctggcagaagc
ctaactccactgggtaagcgcttggcacaattgcctgcggatcctagaattggccgcatg
ttgttggcagccgctgagcagagctgcctgcatgaaatgttgattattgccagtgccttg
agtatccaagaccctagagaacgcccggcagataaacaacaagctgccgatgagaagcat
cgccgcttttcccaccccgagtctgattttatggcttatctggcgttatgggactacgcc
gaagagcagcgtcaggaattatcaagcaatcagtggcgcaagctttgccagaaagagttt
ttttcgtggacgcgtatgcgggaatggcgagaagttcatcaccaactgacgttgctgtgt
cggcaaatgaagctggttaaaaatcaagagcccgcagattatcaacgcttgcatcaagct
ctgttgccagggtttttgagtcagatagcgtttaaaacggaagagcgggattacttaggc
gcccgcaaccgcaagctgagaatctttcccggttcggcgttgtttaagaaatcacctaag
tggattgtcgccgccgagctggccgaaaccagccagctttttgcccgctgcgtggccagg
atcgagccggaatgggtactgggggtaaacgacgaccttctcaaacgccgctattacgaa
ccccattttcaagcaaaaaccgggcgcgttgtggcctttgagcaaaccctgctatttggt
ctgcagattcgcgacaaactgaaggtgaattacgcccccatcaatcccaaagaaagccgg
gaaatttttattcgacaaggactggtcgaaggacgttatcgcggtaaagcggcatttttt
gtccataaccgtgcattgattgacgatattgtaggcttggaagataaaacgcggcgccgg
gatatcctcgcctctgatgaggagctgttccgcttttatgatgagcgactacccgaaacc
gttgtgtctgcgcggcatttagaaagttggttaaaacgcgatgcgcctaaaaatgcgctg
tatctagggcgtggcgatgccatgcgtatcgctgacatcgatgccggtgaagctcagttt
cccgatgtgttgcattggcaggaaaatcaactgccactgagataccattttgaacctggc
catcccgccgatggcgtaacggtgctgttacccatggcgctattggataaagtccccgag
gggcgtttgcaatggctggtgcccggcttactgcgagaaaagtcgattgccttagttaaa
gcgctgcccaaggcccagcgcaaacaactggtgccggtgcccgattacgttgaccgggcc
ttggaaacgctgtcgccctctgacacgtctttactcgaggcgctatcaattgcgctaaaa
cgcattagcggtgttgaaattgatttgcagagctggtcagcacaatcgctagatgactac
tatcgaatgaatatccgggtattggatgatgccggcgaaaccctggcggaaagtcgaaat
ttgaattcgctgcgaagcaaactcagccatcgggtgcagagcagtatcgccaaagaaacc
ggcaagggttttgagtctagagaggttgattgttgggattttggtgcgttggcggtagag
catcaatttaaacaaagcggtgcgactttaacagcttacccctgcttgcgactgcgcaaa
cagacggtagaactggccttggcggagtcgctccaagaggcacagcgggaaagccttgca
ggcgtgcagcaattattgttgcttcgactcggccaacaaaccaagggcttgcgcaaacag
ttgtttagcaataacgcccagcaattgcagtttgcggcctgccagcaggaccggcgccaa
tggatagacgataccttaatggcggcggcccgggaggcgtttggtttgagcacagagtgt
cttccccgcaatgaagaggcttttgagtcaatctggcagcgtggtcgcagtgagtttgtg
ccagtggcggagcgctatgatgttttgctgggcgaaatattagggctgtatagcgatatt
tgtcggcggatgaaatccttgaatagcttggcgtggattcagagtattaatgatattcgc
cagcaactgagcagcctgtttagcaaggggtttattcgggattgcagtttacaagagctg
gcgcagtttccgcgctatcttaaagcggtgctgcagcgtatggacaagctcgacggtaac
tttcagcgagaccgtcaatgcacattgattattgaaccgatgcaggaaaaagtcgatcag
gtgttgcttaaagacccattggcaatgaccctggcggattttgccgagtttcgttggatg
ctagaagaattcagggtctcgctgtttgcccaacagctgggtaccgcaatgccggtgtct
gaaaaacgcttaaagaatgcttggaaggcgctggcaccacttgtaacaaaagcttag
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