Spongiibacter sp. IMCC21906: IMCC21906_02166
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Entry
IMCC21906_02166 CDS
T03945
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spoi
Spongiibacter sp. IMCC21906
Pathway
spoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC21906_02166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spoi03019
]
IMCC21906_02166
03009 Ribosome biogenesis [BR:
spoi03009
]
IMCC21906_02166
Enzymes [BR:
spoi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IMCC21906_02166
Messenger RNA biogenesis [BR:
spoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IMCC21906_02166
Ribosome biogenesis [BR:
spoi03009
]
Prokaryotic type
rRNA processing factors
IMCC21906_02166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AKH69833
UniProt:
A0A0F7M6L8
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All DBs
Position
2320224..2323181
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AA seq
985 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIENRTRVQKKANIYKGTITRVEPSLEAAFVDF
GAERHGFLPLKEISKEYFYRNPSDVSGRAKIKDLVKEGTEVIVQVEKEERGNKGAALTTF
VSLAGRYMVLMPNNPRAGGISRRIEGEDRSALKDALSSITIPDGMGVIVRTAGVGRSSEE
LQWDLDYLLHLAAAIKQAGAERKAPILILQESNVIIRAIRDYLRDDIDQVLIDGEDSYNE
AMHFVEQVMPHFKNKVRFYQDPVPLFNRYQIESQIESAFTREVQLPSGGSIVIDPTEALV
SIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLIVVDFIDMMAARNQREVE
NRVKDAMEADRARVQVGRISRFGLLEMSRQRLRPSLGETSAKVCPRCSGQGTIRDTKSLA
LSILRLVEEEANKEKSAEIRAIVPVNVGAYLLNEKREAIHGIEQRSSVRLVIIPTPTLDT
PHFDVQRLRGDDLTDESEVSYKIASELESEADEFEQDAAAIQPAPAAVVRTLAPKAPAPA
PASPTQEAAADTPAATAATPKKKDNGQPGFFSRLGKGLATLFAGEPPKIDTPAVKPTSTP
EENSDGNSNRQNRNSNDRRNQRNRNNNRRGSDNRPNRNRNNRDDDNSQIDNEQVQAKKER
KPVAEKANEQQDDSQRPKRRPNNRKPRGPQERRRSKAPEGELPVEQRSDSTADAVAAEAP
SKNDAAEPKPRRERKTEKPAAKAKPSEPTAQAKVETSKTDTEASEKPAETVAKKVNSVPE
QQAERSAETATPAEAEPKASEPAKEPAATEEAPVTAPKVTTEESATLTEAETPTQEAEPA
TVDAVAEEPSTTEETPAVEKAPEAPALQDREAANTEANKPEPAITPAPSENAPQVQPVSV
EESTTPEVATTPAAPRAEEAAATTSTEQLRPMGRAANDPRVSPKPMTELQITTDRPQPPA
LDRNIVAQPDPNRPALPRAANDPRN
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcaactcaaccagaagagttgcgtgttgccctcgtagac
gggcagcgtttatacgatctggatattgaaaaccggacacgggttcaaaaaaaggccaac
atctataaaggcaccatcacccgggttgaacccagcctagaggcagcatttgtcgacttt
ggcgccgagcgccacggttttctccccctcaaagagatttctaaagaatatttctaccgc
aacccctctgacgtcagcggccgcgccaagatcaaagatcttgttaaagaaggcactgaa
gttatcgttcaggttgaaaaagaagaacgcggcaataaaggtgcggcattaaccacgttt
gtcagccttgctggccgctacatggttttaatgcccaataatcctcgtgctggcggcatc
tctcgtcgcattgagggcgaagatcgtagcgccctcaaagacgcactcagcagcatcact
attcccgatggcatgggcgttatcgtccgcaccgctggtgttggtcgcagctccgaagaa
ctgcaatgggatttggactacctccttcatctcgccgcagcgatcaaacaagctggtgca
gaacgcaaagcgcctattctaattctgcaagaaagcaacgtcatcattcgcgccatccga
gactacttacgcgatgatatcgaccaagtccttatcgacggcgaagactcttacaacgaa
gccatgcactttgttgagcaggtcatgccgcactttaaaaacaaggtccgtttttaccag
gatcccgtcccattatttaatcgctaccaaatagaaagtcagattgagtccgcgtttacc
cgcgaagtacagcttccctccggtggctccatcgtaatcgatcccaccgaagcgctagtc
tctatcgatatcaactccgcccgcgcaaccaaaggcggcgatatcgaagaaacagcctta
caaaccaacctagaggcggctgacgaaatcgcacggcaattacgactgcgtgatatcggc
ggcctaattgtggtcgactttatcgacatgatggctgcccgcaaccagcgggaagtcgaa
aaccgcgtcaaagacgccatggaagccgatcgcgcccgagttcaggtgggccgaatctcc
cgctttggccttttagaaatgtctcgccagcgcctgcgtccatccttgggcgaaaccagc
gccaaagtatgccctcgctgcagcggtcaaggcaccattcgcgacaccaaatcacttgcg
ctgtctattctgcgtttggttgaagaagaagccaataaagaaaagagcgccgaaatccgc
gctatcgtgcctgtaaacgtgggggcctacctgctgaatgaaaagcgtgaagcgattcac
ggcatcgagcaacgcagctctgtgcgtcttgtcatcattccaacaccgacgctggacaca
ccccattttgatgttcaacggttgcgaggcgacgatctcactgacgaatctgaagtgagc
tacaaaattgcctctgaactagagtctgaggccgatgaatttgagcaagacgcagccgca
atccaacctgcgcccgctgcggttgttcgcacactggctcccaaggcacctgctccggca
cctgccagccccacccaagaagcagctgcagacacccctgccgctactgccgcaacaccc
aaaaagaaagacaacggccaacccggcttcttcagccgattaggtaaagggcttgccact
ttatttgccggcgagccaccaaaaatcgacaccccagcggttaaacccacttctacccca
gaagaaaacagcgacggcaacagcaatcgtcaaaaccgcaacagcaatgaccgccgcaac
cagcgcaaccgcaataacaaccgtcgtggcagtgataaccgcccgaaccgtaaccgcaac
aatcgggatgacgacaacagtcaaattgacaacgagcaagtacaggctaaaaaagaaaga
aagcctgtagcagaaaaagccaacgaacagcaggacgacagccagcgcccgaaacgtcgt
cccaataatcgcaaaccacgcggcccccaagagcgtcgtcgcagtaaagcgccagaggga
gagctccctgtagaacaacgcagcgattccactgccgacgcggtagcggcagaagcacca
tcaaaaaatgacgccgccgaacccaagccacgtcgcgagcgcaaaactgaaaagcccgct
gccaaagcaaagcccagcgagccgacggcacaggctaaggtagaaaccagcaaaacggat
actgaagcgtctgaaaaaccggctgaaaccgttgctaaaaaagtcaattcagtacctgag
caacaagcagaacgctcagccgaaaccgctaccccagctgaagccgaaccaaaagcatca
gaaccggcaaaagaacccgctgcgactgaagaggcgccggttaccgcaccgaaagtcact
actgaagaatcagcaacgcttactgaagccgaaacgccaacccaagaggctgaaccagca
acagtagatgccgttgctgaagagccctctacgaccgaagaaaccccagctgtagagaaa
gcaccggaagcgcctgccttgcaagatcgtgaagcagcaaataccgaggcgaataagcca
gaaccggccatcacgcccgccccttcagaaaatgccccgcaggttcagcctgttagcgtt
gaagagagcacgactcccgaggtggccacaacgccagcggcaccgcgcgcagaggaagcc
gctgcaaccacgagcacagaacagcttcgccctatgggccgcgctgcaaatgatccgcgg
gtgagcccaaaacctatgactgaactgcagatcaccactgaccgtccacagcccccggct
ctagaccgtaatattgtggcgcagccagaccccaatcggcctgccttgccgcgtgcagct
aacgatcctcgcaattaa
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