Spongiibacter sp. IMCC21906: IMCC21906_02302
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Entry
IMCC21906_02302 CDS
T03945
Name
(GenBank) tRNA pseudouridine(38-40) synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
spoi
Spongiibacter sp. IMCC21906
Brite
KEGG Orthology (KO) [BR:
spoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spoi03016
]
IMCC21906_02302
Enzymes [BR:
spoi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
IMCC21906_02302
Transfer RNA biogenesis [BR:
spoi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
IMCC21906_02302
Prokaryotic type
IMCC21906_02302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-ProteinID:
AKH69962
UniProt:
A0A0F7M6R3
LinkDB
All DBs
Position
complement(2450074..2450943)
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AA seq
289 aa
AA seq
DB search
MPQLPDSKDAFLRIDSAPLPEGRIALGLEYQGQNYRGWQRQSKPSMPSVQEQLEKALSKI
AAKDVTVICAGRTDARVHAAHQVVHFDAPAMRSRKAWVTGCNSQMPSDIVVKWAEPVTDE
FHARFSATARRYRYIILNRQQPTAHLAGLVTHVDVPLDAELMHREAQVLLGEQDFSGFRA
SSCQSHSPMRNIHFAEVRRWQDFIVLDIQGNAFLHHMVRNIAGVLIAVGRGEQPAGWTAQ
VLASRDRTQGGVTAKPYGLYLVDVSYPAHFNLPQNRPGPVFVNTEFLRP
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgccccagcttcccgactcaaaagacgcttttctgcgtatcgatagcgcccctctaccg
gaggggcgcattgctttgggcttggaataccaaggtcaaaattaccggggttggcagcgc
caaagcaaacctagtatgcccagtgttcaagagcagctggaaaaagccctgagcaaaatt
gcagccaaagacgtcaccgtaatttgcgcaggcagaaccgacgccagagtgcatgcggca
catcaggtggtgcactttgatgctccagcgatgcgttctcgtaaagcctgggtgacaggc
tgtaactcacaaatgcccagcgatattgtggtgaagtgggcggagccggtgaccgatgaa
tttcacgcccggttttcagccacggccagacgttaccgctatattattttgaaccgtcag
cagccaactgcccaccttgccggtttggtgacccacgttgatgtgcccttagatgcagaa
ttaatgcaccgcgaggcccaggtattgttgggcgaacaagactttagtggctttcgggcg
tcgtcctgtcaatcccattcaccgatgcgcaatattcattttgccgaagtacggcgctgg
caggactttattgttctggatattcagggcaatgcctttttgcaccatatggtacgtaat
atcgccggtgttttgattgcggttggacgtggtgaacagcctgcgggctggacggcgcag
gtgctggccagtcgggatcgtacccaaggcggcgttactgccaagccctatggcttgtat
ctcgttgacgtgagttatcccgcgcacttcaacttgccgcaaaatcggccggggccggtg
tttgtgaacacggaatttctccgtccttag
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