Spongiibacter sp. IMCC21906: IMCC21906_03083
Help
Entry
IMCC21906_03083 CDS
T03945
Name
(GenBank) oligoribonuclease (3'->5' exoribonuclease)
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
spoi
Spongiibacter sp. IMCC21906
Pathway
spoi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
spoi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
IMCC21906_03083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spoi03019
]
IMCC21906_03083
03009 Ribosome biogenesis [BR:
spoi03009
]
IMCC21906_03083
Messenger RNA biogenesis [BR:
spoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IMCC21906_03083
Ribosome biogenesis [BR:
spoi03009
]
Eukaryotic type
Pre-60S particles
RNases
IMCC21906_03083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AKH70723
LinkDB
All DBs
Position
complement(3275671..3276213)
Genome browser
AA seq
180 aa
AA seq
DB search
MSKKKNLIWIDLEMTGLDTQNDHIIEIATVVTDADLNVLAEGPVLAIHQPDEVLAGMDEW
NTKQHGSSGLTKRVQETCITAAEAERLTLTFLDKYSEPGASPMCGNSICQDRRFMAREMP
QLEAYFHYRNLDVSSLKELVKRWQPQLMNGLQKNATHLALDDVHDSINELKYYREHFLQV
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaaagaagaatttaatctggatcgatctggaaatgacgggtttggatacccag
aacgatcatattattgaaattgccaccgtggtcaccgatgccgatttgaatgtgctggcc
gaggggccggtgttggccattcaccagcccgacgaggtgttggcggggatggatgaatgg
aatacgaagcagcatggcagttctggcttgaccaagcgggtgcaagaaacctgcattact
gccgcagaagctgagcgccttacgttgacctttttagataagtacagcgagccaggcgcg
tcacccatgtgtggcaacagcatttgtcaggaccgccgctttatggcccgggagatgcct
cagcttgaagcgtatttccattaccgcaatttggatgtcagcagcctcaaagagctggtc
aagcgttggcagccccagttgatgaatggtttgcagaaaaatgctacccatttggcgctg
gacgatgttcatgattcgattaatgagttgaagtattaccgcgagcattttttgcaggtg
taa
DBGET
integrated database retrieval system
